-
dedup_wf_001--bf01533b74f5d1d9c59d087a1e3102f8
NEXUS file containing total concatenated mDNA, rDNA & nDNA and PAUP* 4.0 analysis commands from Jackson et al. ISE -
survival_data
We measured larval mortality for S. droebachiensis at 3 different temperatures (3, 10 and 21 °C) reared in 4-l culture jars (n = 3). Temperatures in the jars were maintained... -
Community_data
The community data files are bat abundance/absence matrices for the family Vespertilionidae and the genus Myotis. Community data for all bat taxa can be found at... -
autosomes
This file contains data from the paper "Local selection underlies the geographic distribution of sex-ratio drive in Drosophila neotestacea." These data are the microsatellite... -
Tar ball of genome .fq files of Mustela erminea (N=10)
Tar ball of genome ,fq files of Mustela erminea, representing specimens from Museum of Southwestern Biology (MSB) with catalog number: 152905 (ME01), 221783 (ME02), 199855... -
dedup_wf_001--c81f89d14a2bdf9227686f6a570ba02b
Data from the ancestral state estimation analysis to detect convergent evolution of host associations. -
Ancestral_state_analysis
Contains files needed to replicate the ancestral state estimation analysis from the associated R script (R_code_for_analysis.R) -
dedup_wf_001--2154d6bec2817cc28f3c3ae605a8d379
The DNA sequence file is in FASTA format. The file includes 18 aligned mtDNA cytochrome b sequences generated from Blueface Darter samples used in this study (samples with... -
Occurrence data.
Number of specimens of each species observed at locality stations TU 1422, 1215, and 1354. Counts include specimens questionably assigned to a given taxon. Total numbers of... -
BLAST assignment data for museum-2
Unfiltered BLAST assignment file of contigs identified during the metagenomic analysis of sample museum-2. Use with 'Contig data for museum-2' in MEGAN v4.70. See attached... -
Supplementary Table
Supplementary Table 1: Characteristics of the mitochondrial genome of two syntopic specimens of Arremon aurantiirostris from Panama (GMS 1179 and GMS 1180). Parenthetical... -
Distance_matrices
Standarized distance matrices (Genetic, SST and geographic distance) used for Mantel test, Partial mantel test and MMRR -
BLAST assignment data for modern-1
Unfiltered BLAST assignment file of contigs identified during the metagenomic analysis of sample modern-1. Use with 'Contig data for modern-1' in MEGAN v4.70. See attached... -
Sample metadata
Microbiome sample metadata. "SampleID" = unique identifier for a sequenced 16S rDNA amplicon pool corresponding to a single sample. "Name" = more descriptive unique sample name.... -
Dataset S1. All data used for modeling in this study.
All datasets used for modeling in this study, including: (1) the full GLOPNET dataset with missing data, (2) GLOPNET complete cases, (3) GLOPNET complete cases for rosids, (3)... -
Supp_Table_2
Supp Table 2 Differentially methylated gene regions in the initial tumor vs first recurrence. Abbreviations: gene_assoc: genes IDs; hg19coord: human genome coordinate;... -
Results of principal component analysis.
Loadings, eigenvalues and cumulative amount of variation explained by four of the components (PC's) obtained from a PCA analysis using the log-transformed volume or the relative... -
deb_pet_fst_map_dnds
Contains list of all polymorphic genes in H. debilis - H. petiolaris species pairs and dn, ds, dn/ds values. -
Supplementary Data 1
Supplementary Data 1. Raw fossil data. Repository and Specimen indicate the collection in which specimen is held and its specimen number. Family, Subfamily, Tribe, Genus, and...
