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Main SNP file STRUCTURE format
Dataset of 3764 SNP structure file. Population information included in second column. -
dedup_wf_001--0d70ba401028555fe4c68840718be5fd
Standard input file for BLAST2GO. This file can be loaded directly into .jnlp executable file downloaded from BLAST2GO website. Includes BLASTX results against NCBI’s... -
dedup_wf_001--905989f579f0baa9b7c38f16cc2e049f
Data from Table 2. Alpha estimate for three introgressed P. balsamifera regions in P. trichocarpa, one in chromosome (Chr) 06 (region A) and two in chromosome 15 (B and C). -
Sex chromosome analysis
This compressed directory contains the infiles and R script for the analysis to determine if SNPs associated with parallelism between melissa-east and melissa-west populations... -
Female headless body images of Drosophila melanogaster_DGRP (RAL-799)
Female headless body images of Drosophila melanogaster_DGRP (RAL-799) -
Largest SNP dataset statistics results from Stacks
parameters set -m 8 –N 2 –M 4 –n 3 -t. A filtered version of this dataset was used in analysis in paper. This dataset required SNPs occur across 2 populations at 90% to be called. -
dedup_wf_001--417836f8e8784abda81d93cfec196e64
Genotypes for European lines of A. thaliana (Chromosome 1) genotyped at a density of one SNP per kb. These data are used in our tutorial example 2 and supplementary file 2. Data... -
Handling time, PCR success, Sequence success, and Target sequence success data
Handling time, PCR success, sequence success, and target sequence success for chironomid pupal exuviae samples. -
SNP FST file
This is the pairwise fst output for individual snps. The non-informative sites have been suppressed, so all the rows are the SNPs that meet the coverage criteria. the columns... -
D. melanogaster median Fst and latitude
D. melanogaster Fst values for pair-wise population comparisons and the latitude of each population. The analysis of isolation by distance used the median Fst (median.Fst) and... -
dedup_wf_001--5d1b6ecd655415f557a1258a51fec142
GenBank accession numbers for each submitted sequence -
Pflex_structure
Data file with alleles for 4 microsatellite markers used to run analyses in the program STRUCTURE for Plexaura flexuosa. -
dedup_wf_001--a06720ae59288d4890431706b765983b
This file contains genotypes for all 12 collections tested in the ms as well as related data such as GenePop files and raw data used to generate figures. -
Information on SNPs identified from transcriptome data (vcf file)
SNPs identified from transcriptome alignment files in variant call format. SNPs were identified using GATK. Parameters and filters for calling SNPs are listed in header.... -
dedup_wf_001--4d7a5107b259821be8d9b55f0160759a
Steps 1 and 2 are accomplished by running 1_2_create_datasets.sh for the zebra finch dataset. -
Alternative splice events identified in Peromyscus leucopus transcriptome
This FASTA file contains two sequences for each alternative splicing sequence, labeled as upper and lower splice, that was identified in the Peromyscus leucopus transcriptome. -
Genotype data
The TalentiEtAl_2017.ped file contains the unphased genotype data for all the 929 animals described in the paper: "Genomic analysis suggests KITLG is responsible for a roan... -
dedup_wf_001--b2204c83e40cfff8986df68a48e5dc85
Residual phenotypic data for the totem field (Vancouver) common garden trial. There are about 100 more seedlings in the raw data than the residual data because the residual data...
