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data_phenotypes_TarsusDigitRatio
Tarsus length, body size and digit ratio data used for the initial linkage analysis. A detailed description of the file is in the README. -
dedup_wf_001--81293e890c8896563711d67964c32d81
This .mts file was generated in MEGA 5 and may be opened in MEGA 5. To open in MEGA 6, export the tree to a .nwk file in MEGA 5 and open the .nwk file in MEGA 6. -
dedup_wf_001--905989f579f0baa9b7c38f16cc2e049f
Data from Table 2. Alpha estimate for three introgressed P. balsamifera regions in P. trichocarpa, one in chromosome (Chr) 06 (region A) and two in chromosome 15 (B and C). -
Female headless body images of Drosophila melanogaster_DGRP (RAL-799)
Female headless body images of Drosophila melanogaster_DGRP (RAL-799) -
dedup_wf_001--cef9cd952cce75bb746a7ce9e3ffaaf2
This .mts file was generated in MEGA 5 and may be opened in MEGA 5. To open in MEGA 6, export the tree to a .nwk file in MEGA 5 and open the .nwk file in MEGA 6. -
dedup_wf_001--417836f8e8784abda81d93cfec196e64
Genotypes for European lines of A. thaliana (Chromosome 1) genotyped at a density of one SNP per kb. These data are used in our tutorial example 2 and supplementary file 2. Data... -
dedup_wf_001--680cd6e0f9f369286b2cb29f46c2ee0c
Cuffdiff results file; Differential expression of all pooled organ genes between 5 male and 5 female blue tits -
Handling time, PCR success, Sequence success, and Target sequence success data
Handling time, PCR success, sequence success, and target sequence success for chironomid pupal exuviae samples. -
SNP FST file
This is the pairwise fst output for individual snps. The non-informative sites have been suppressed, so all the rows are the SNPs that meet the coverage criteria. the columns... -
dedup_wf_001--6c340ea41d049061dc491371fefe02bc
File includes inputs and outputs of the MKprf tests (Bustamante et al. 2002). -
D. melanogaster median Fst and latitude
D. melanogaster Fst values for pair-wise population comparisons and the latitude of each population. The analysis of isolation by distance used the median Fst (median.Fst) and... -
dedup_wf_001--5d1b6ecd655415f557a1258a51fec142
GenBank accession numbers for each submitted sequence -
Tajima and Nucleotide Diversity estimates
Data for Figure 2, Figure 4 Supporting Information (Tajimas' D) and Figure 7 Supporting Information (Nucleotide diversity). -
dedup_wf_001--a06720ae59288d4890431706b765983b
This file contains genotypes for all 12 collections tested in the ms as well as related data such as GenePop files and raw data used to generate figures. -
Information on SNPs identified from transcriptome data (vcf file)
SNPs identified from transcriptome alignment files in variant call format. SNPs were identified using GATK. Parameters and filters for calling SNPs are listed in header.... -
dedup_wf_001--4d7a5107b259821be8d9b55f0160759a
Steps 1 and 2 are accomplished by running 1_2_create_datasets.sh for the zebra finch dataset. -
Alternative splice events identified in Peromyscus leucopus transcriptome
This FASTA file contains two sequences for each alternative splicing sequence, labeled as upper and lower splice, that was identified in the Peromyscus leucopus transcriptome.
