53 items found

Tags: Computational Biology Computational Biology Transcriptome

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  • dataset

    MOESM15 of Integrated transcriptome and miRNA analysis uncovers molecular reg...

    Additional file 15: Table S7. Primers used for quantitative RT-PCR in the study.
  • dataset

    dedup_wf_001--07acbe7610e3023ca4d668903692f0c0

    Table S4. The expression levels of genes related to other phytohormone biosynthesis and metabolism in banana during Foc TR4 infection. (XLS 20 kb)
  • dataset

    dedup_wf_001--5af3e998d10b0642df0ac1b915c058d5

    Expression levels (in FPKM) for all transcripts identified in the study. (XLSX 10168 kb)
  • dataset

    Additional file 4: Table S2. of De novo transcriptome sequencing and gene exp...

    List of Elymus nutans transcriptome annotations. (XLSX 10 kb)
  • dataset

    Additional file 2: Table S1. of The estrous cycle surpasses sex differences i...

    Description of the differential expression analysis for all genes detected in the study and for each pairwise comparison. All values correspond to DESeq2 computations. The last...
  • dataset

    dedup_wf_001--9f0bbd66433b9dd84d881cd658f80a5b

    Additional file 6: Enriched GO terms obtained through ClueGO analysis. Gene names and GO terms of biological processes for enriched transcripts analysed with ClueGO. The data...
  • dataset

    Additional file 9: of Analysis of Dendrobium huoshanense transcriptome unveil...

    Detailed information about unigenes associated with putative alkaloid biosynthesis in D. huoshanense. (XLSX 60 kb)
  • dataset

    Additional file 4: of Umbilical cord as a long-term source of activatable mes...

    Table S3. Contains a list of upstream regulators from Ingenuity Pathway Analysis (IPA) of the significantly deregulated genes from Additional file 3: Table S2. (XLSX 23 kb)
  • dataset

    Additional file 13: Table S9. of Dynamic transcriptome and DNA methylome anal...

    The differentially methylated regions (DMRs) in 120 and 240 days old Laiwu pigs. The DMRs were generated by sequencing depth ≥ 10×, at least 3 DMCs, meanwhile the minimum value...
  • dataset

    Additional file 10: of Dual species transcript profiling during the interacti...

    Table S6. The differentially expressed Foc genes (DEFGs) during infection from banana roots. (XLS 18 kb)
  • dataset

    Additional file 3: of Transcriptomic analysis of male and female Schistosoma ...

    Table S2. Detailed information on the top 50 most significantly upregulated DE transcripts. (XLSX 81 kb)
  • dataset

    Additional file 16: of Dual species transcript profiling during the interacti...

    Table S8. The differentially expressed genes related to carbon metabolism in banana during Foc TR4 infection. (XLS 35 kb)
  • dataset

    dedup_wf_001--7364f343467b7ed57bcd8156d14cb9ae

    Table S2. The expression levels of genes related to plant-pathogen interaction in banana roots. (XLS 41 kb)
  • dataset

    Additional file 7: of Dual species transcript profiling during the interactio...

    Table S3. The verification of gene expression levels involved in phytohormone transduction in Fig. 4. (XLS 39 kb)
  • dataset

    Additional file 10: File S5. of Global transcriptional analysis suggests Lasi...

    List of genes with LFC and FDR values for each contrasting condition (XLSX 2599 kb)
  • dataset

    Additional file 9 of Transcriptome profiles of Quercus rubra responding to in...

    Additional File 9: Table S5. Coexpression network data, including module membership for all genes, top hub gene for each module, and enriched GO and KEG terms for the modules...
  • dataset

    Additional file 8: Table S4. of The estrous cycle surpasses sex differences i...

    Summary of the differential exon usage analysis for each pairwise comparison. FvM: females vs males, PvM: proestrus vs males, DvM: diestrus vs males, PvD: proestrus vs diestrus....
  • dataset

    Additional file 18: of Dual species transcript profiling during the interacti...

    Table S9. The putative virulence associated genes in the banana fungal pathogens Foc TR4. (XLS 43 kb)