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Genepop file with all SNP data
Genepop file with all SNP data of the study along with an EDA-linked marker. -
Filtered VCF file used in study (chr9) - barthii as reference genome
O. barthii reference genome based SNP calls. Filtering process described in paper. -
Filtered VCF file used in study (chr6) - barthii as reference genome
O. barthii reference genome based SNP calls. Filtering process described in paper. -
Input and execution code for Colteaux_Johnson_2016
Attached R file includes the code described in the listed publication. The companion JAGS (just another Gibbs sampler) code is also stored in this repository under separate cover. -
Filtered VCF file used in study (chr2) - glaberrima as reference genome
O. glaberrima reference genome based SNP calls. Filtering process described in paper. -
Filtered VCF file used in study (chr5) - glaberrima as reference genome
O. glaberrima reference genome based SNP calls. Filtering process described in paper. -
r37980778c78--39cad84d9205de611db1d01c812c74cc
Accuracy of discovered primitive endpoints (in number of frames). -
Filtered VCF file used in study (chr4) - glaberrima as reference genome
O. glaberrima reference genome based SNP calls. Filtering process described in paper. -
code to get pairwise bottleneck distance between islands
This file contains an R code to get pairwise bottleneck distances -
dedup_wf_001--29693121a8aadf0cb018ef02ef93a351
O. barthii reference genome based SNP calls. Filtering process described in paper. -
MOESM21 of SAFTA and AFTA: a comparative welfare analysis of two regional tra...
Additional file 21. Log file. -
dedup_wf_001--346b3ee05ff8fd3b62fa53c224aa9d81
O. glaberrima reference genome based SNP calls. Filtering process described in paper. -
dedup_wf_001--ef5d2001cd40c070cd3bbfbca77a6035
O. glaberrima reference genome based SNP calls. Filtering process described in paper. -
MOESM2 of Effect of nitric oxide on postoperative acute kidney injury in pati...
Additional file 2. Risk of bias graph. -
Filtered VCF file used in study (chr11) - barthii as reference genome
O. barthii reference genome based SNP calls. Filtering process described in paper. -
Filtered VCF file used in study (chr10) - barthii as reference genome
O. barthii reference genome based SNP calls. Filtering process described in paper. -
Filtered VCF file used in study (chr11) - glaberrima as reference genome
O. glaberrima reference genome based SNP calls. Filtering process described in paper. -
LMNSNPdata
This data achieve including all the genotypes for each SNP for each animal. The files were created from the original genotyping file using "awk" or "sort" commands.
