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Main SNP file STRUCTURE format
Dataset of 3764 SNP structure file. Population information included in second column. -
Mather Sharman Summary Data
This file contains derived data used for plotting graphs, and the actual graphs used in the paper. Raw data values in the accompanying file are converted in units suitable for... -
Genepop file with all SNP data
Genepop file with all SNP data of the study along with an EDA-linked marker. -
Filtered VCF file used in study (chr9) - barthii as reference genome
O. barthii reference genome based SNP calls. Filtering process described in paper. -
Filtered VCF file used in study (chr6) - barthii as reference genome
O. barthii reference genome based SNP calls. Filtering process described in paper. -
saplings 1999
Sapling vegetation within stand polygons (see file "stand polygons" for polygon locations). -
Input and execution code for Colteaux_Johnson_2016
Attached R file includes the code described in the listed publication. The companion JAGS (just another Gibbs sampler) code is also stored in this repository under separate cover. -
McAllister_Miller_Locality_Ploidy_Info
This file includes locality and ploidy level inforomation for each specimen included in both SNP files in this dataset -
Filtered VCF file used in study (chr2) - glaberrima as reference genome
O. glaberrima reference genome based SNP calls. Filtering process described in paper. -
Filtered VCF file used in study (chr5) - glaberrima as reference genome
O. glaberrima reference genome based SNP calls. Filtering process described in paper. -
Filtered VCF file used in study (chr4) - glaberrima as reference genome
O. glaberrima reference genome based SNP calls. Filtering process described in paper. -
code to get pairwise bottleneck distance between islands
This file contains an R code to get pairwise bottleneck distances -
dedup_wf_001--29693121a8aadf0cb018ef02ef93a351
O. barthii reference genome based SNP calls. Filtering process described in paper. -
dedup_wf_001--346b3ee05ff8fd3b62fa53c224aa9d81
O. glaberrima reference genome based SNP calls. Filtering process described in paper. -
dedup_wf_001--ef5d2001cd40c070cd3bbfbca77a6035
O. glaberrima reference genome based SNP calls. Filtering process described in paper.
