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segment4_HA_H5
The files in this zip file contain Influenza A virus nucleotide sequence data, phylogenetic trees and data tables from segment 4 (Hemagglutinin, HA) subtype H5N1-H5N9, including... -
Supplementary Table
Supplementary Table 1: Characteristics of the mitochondrial genome of two syntopic specimens of Arremon aurantiirostris from Panama (GMS 1179 and GMS 1180). Parenthetical... -
internals_subsample_for_display
The files in this zip file contain Influenza A virus nucleotide sequence data, phylogenetic trees and data tables from segments = 1, 2, 3, 5, 7, 8 (the internal segments). This... -
Outgroup Dataset
Fasta file as exported from STACKS software. This file includes sequences for all populations of Primula farinosa, P. frondosa, and P. exigua and was used for the phylogenomic... -
dedup_wf_001--9b4ed119243fb5bcd655c8364aeaafd0
Microsatellites datase used to infer Malus sylvestris recolonization history since the LGM -
Environmental data
Bioclimatic data and environmental data for all 56 European peatland site (geo referenced by longitude [long], latitude [lat] and altitude [ALT]. MAT = Mean annual temperature... -
dedup_wf_001--9f778369789498071a5b869bbb2548e8
Excel file with data in six sheets and including a README. -
dedup_wf_001--f4b40575eb9c1dd4cd5bad9338e327b0
FASTA format alignments for 151 protein-coding using three assembly methods: consensus, ambiguity (iupac), and allele phasing. Alleles for each individual are annotated as _h1... -
dedup_wf_001--4b00ff3f3e6e61ff29843b7b056117b4
Geographic regions and continent of origin associated with each genetic sample. These geographic regions form the basis of the hierarchical tests of genetic structure and the... -
Tree Files
-Astral_Bootstrap.tre newick formatted 100 bootstrap replicates from the COMPLETE ASTRAL-II species analysis -Gene_Trees_Full.tre newick formatted 498 "best" gene trees from... -
Genetic data
This zip contains our genetic data (8 microsatellites) for our nematode populations in a Fstat format. Each file correspond to one population (the name of the file),with the... -
Supplementary Table 1
Commensal rodent species are key reservoirs for Toxoplasma gondii in the domestic environment. In rodents, different T. gondii strains show variable patterns of virulence... -
dedup_wf_001--9c36ce2d24d432189a5330c1b4544d9f
Single nucleotide polymorphism (SNP) raw data files for 177 individuals for use with the software PLINK: MAP file. -
dedup_wf_001--97ff368da93f934117cd16538e83368e
These are the file associated with the geological time calibration analysis including the BEAST XML files. -
POPS_geo_dist_circle
This is a file containing pairwise distances between each individual/sample site calculated using the greater circles algorithm in POPS. -
Cognettia COI consensus tree file from MrBayes analysis
Cognettia COI consensus tree file from MrBayes analysis -
Migration routes of juvenile honey buzzards annotated with wind estimates at ...
This dataset was processed from the raw tracking data as described in Vansteelant et al. (2017). -
WolvesAll_22feb2012.ped
Single nucleotide polymorphism (SNP) raw data files for 177 individuals for use with the software PLINK: PED file. -
Mercurialis annua SNP file
This VCF file includes the filtered SNP dataset for 40 Mercurialis annua samples (578,125 SNPs). Information on gene capture probe, ancestral state (by comparison with M. huetti... -
dedup_wf_001--69284ff831ffca6db1ee47c826c2dea9
This ZIP file contains Excel files with collected data from the various centers.
