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segment4_HA_H5
The files in this zip file contain Influenza A virus nucleotide sequence data, phylogenetic trees and data tables from segment 4 (Hemagglutinin, HA) subtype H5N1-H5N9, including... -
internals_subsample_for_display
The files in this zip file contain Influenza A virus nucleotide sequence data, phylogenetic trees and data tables from segments = 1, 2, 3, 5, 7, 8 (the internal segments). This... -
Environmental data
Bioclimatic data and environmental data for all 56 European peatland site (geo referenced by longitude [long], latitude [lat] and altitude [ALT]. MAT = Mean annual temperature... -
dedup_wf_001--f4b40575eb9c1dd4cd5bad9338e327b0
FASTA format alignments for 151 protein-coding using three assembly methods: consensus, ambiguity (iupac), and allele phasing. Alleles for each individual are annotated as _h1... -
Tree Files
-Astral_Bootstrap.tre newick formatted 100 bootstrap replicates from the COMPLETE ASTRAL-II species analysis -Gene_Trees_Full.tre newick formatted 498 "best" gene trees from... -
Genetic data
This zip contains our genetic data (8 microsatellites) for our nematode populations in a Fstat format. Each file correspond to one population (the name of the file),with the... -
Supplementary Table 1
Commensal rodent species are key reservoirs for Toxoplasma gondii in the domestic environment. In rodents, different T. gondii strains show variable patterns of virulence... -
WolvesAll_22feb2012.ped
Single nucleotide polymorphism (SNP) raw data files for 177 individuals for use with the software PLINK: PED file. -
Trait_data
This spreadsheet contains trait data for all 5831 species of mammals that lived during the last ~130,000 years including both extant and extinct species. This data includes body... -
Microsatellite Dataset
Microsatellite information for three different populations, O. histrionica, pHYB (putative hybrid) and O. lehmanni. Data for seven microsatellite markers, two columns per locus,... -
morphological data
We assessed the morphological differences between 328 adult specimens from the R3 and R. tanezumi mt lineages. Five linear measurements were considered: head + body length, tail... -
WolvesAll_22feb2012.ped
Single nucleotide polymorphism (SNP) raw data files for 177 individuals for use with the software PLINK: PED file. -
Supplemental Data 5
Reference tree. Topology revealed by the all-nrDNA matrix of concatenated sequences of ETS, ITS and matK. Branches with support below 50% bootstrap are collapsed. -
Mitochondrial sequences
This data file contains all the mitochondrial sequences used in the study Beresford et al. in a fasta format. -
Microsatellite_data
Explanations for datafile "Microsatellite data.xls" This datafile contains microsatellite genotype information of Mastomys natalensis. General comment: "-9" describes a... -
dedup_wf_001--e31f5ea7e6661d65152c87ea9e55b503
TNT file including dataset made by Gauthier et al. (2012) modified by Simoes et al. (2017). Taxa added: Slavoia darevskii, Cryptolacerta hassiaca, Ardeosaurus brevipes,... -
Supplemental Data 2
List of materials included in each of the three aporrhaid species treated in the text, organized by locality (Fig. 1) and indicating ammonoid zones. Additional materials are... -
dedup_wf_001--70642c719838904540469500798ec2bd
Single nucleotide polymorphism (SNP) raw data files for 177 individuals for use with the software PLINK: PED file. -
Phenotype Data
Phenotype data for 274 half-sib families used in association analysis (except entries 137,161,196; see Gibbs sampler file). Includes the following columns: a. TREE:...
