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dedup_wf_001--c2b390cb87fd9c9a7588499bf5e15814
Restart files and input files for the v1306 scenario from level 13 to level 15 -
De Jong and Fowler data archive
The first worksheet in this Excel file has the data we analyzed for this paper. The second worksheet in this Excel file has metadata (variable codes, etc.) for this data set. -
Supplemental Data 1
Phylogenetic dataset (TNT) used in the study. The TNT file can be converted to .nex from the ‘export (nexus format)’ function in TNT, or alternatively can be opened by ‘open... -
dedup_wf_001--38c17a7155a866adbdc58f4407284972
This file contains a description of the complete datapackage, individual ReadMe files are available for each data file. -
Annotation File for the Annotated Reference Transcriptome of the Eastern Oyster
The Excel file provides the annotation information, including original source transcriptome, for each contig in the reference transcriptome. The ReadMe files describes the... -
Model source files
This file contains the source files of the model used in the article. This model is an object-oriented model that has been implemented in Borland Delphi. -
dedup_wf_001--67252ba1570d23bd4f7373b2bcb1516c
Raw fastq file containing sequence reads for L. borealis - (1 of 2). Original file was split into two files for upload to Dryad. Use 'cat' function to concatenate the two files... -
processed_data.tar.gz
This file contains all the analysis files except raw Illumina data (available as a separate file) and raw Oxford Nanopore read in FAST5 format. As FAST5 files require Oxford... -
dedup_wf_001--965e8be9bd41c08528741d030583598a
A zip file containing two data files plus a third text file containing descriptions of the data files. See file "File annotations.txt" included int the archive for more... -
dedup_wf_001--2216a7c17adb929d62dc741c6ed299e0
The Nexus format file for the Bayesian inference analysis -
ToothMorph
ToothMorph is a zipped directory which includes all code, csv files, data matrices, and analyses used in this manuscript. Details are included in a readme file within this... -
BAYPASS data and scripts
This compressed directory contains the infiles, outfiles, and scripts for the BAYPASS analyses used to delineate host-associated SNPs and to test for parallelism. A readme.txt... -
SAGUARO input file
The feature file required for SAGUARO analysis consisting of information on SNPs from 43 pupfishes. This file was converted into this format from a vcf file. -
dedup_wf_001--42f98f6c0f7b6da55955247f8721e8b9
Tar archive containing netcdf files. See readme file for further details -
ANIMAL_ID coding in capture file
Details of coding used in SPACECAP input files. In input files ANIMAL_IDs must be represented as sequential numbers. This file shows which ANIMAL_IDs correspond to which... -
Scripts and data for the linkage map
This compressed directory contains a series of perl sciprts and data files that we used to generate the linakge map for Timema cristinae. The specific steps we took, including... -
r37980778c78--ee2a042c889d7b37a1218529e883f322
This replication archive contains three files. A public use CPS file for January-May of 2019 and 2020, a file of dates for state school closures and stay-at-home orders, and a... -
estimate.parameters.R
This file contains the code for the regression analyses run in this paper. The data.Rdata feeds right into it and the two files can be used as is together. Please read the...
