-
Species, land use and temperature data
The file includes data from different sources including reports (see file for detailed references) and estimations based on these sources. -
Data, analysis scripts, and results
This is the main working directory for the project and it contains clean data, all scripts needed to reproduce the analysis, results, figures, notes from the development... -
FISH experiments for line N02Y5109
Zip file containing individual tif files of blue (DAPI) green (FITC) and red (Alexa594) fluorescence taken on Zeiss or Nikon epifluorescence microscope. File name give Slide... -
dedup_wf_001--c2b390cb87fd9c9a7588499bf5e15814
Restart files and input files for the v1306 scenario from level 13 to level 15 -
dedup_wf_001--8879a40e60607f2c034a740d5732ccca
See comments in file for explanation. Includes the same data as the other morphological data file but is better explained. Includes Raw and Procrustes Distance co-ordinates. -
De Jong and Fowler data archive
The first worksheet in this Excel file has the data we analyzed for this paper. The second worksheet in this Excel file has metadata (variable codes, etc.) for this data set. -
Supplemental Data 1
Phylogenetic dataset (TNT) used in the study. The TNT file can be converted to .nex from the ‘export (nexus format)’ function in TNT, or alternatively can be opened by ‘open... -
dedup_wf_001--38c17a7155a866adbdc58f4407284972
This file contains a description of the complete datapackage, individual ReadMe files are available for each data file. -
Annotation File for the Annotated Reference Transcriptome of the Eastern Oyster
The Excel file provides the annotation information, including original source transcriptome, for each contig in the reference transcriptome. The ReadMe files describes the... -
Model source files
This file contains the source files of the model used in the article. This model is an object-oriented model that has been implemented in Borland Delphi. -
dedup_wf_001--67252ba1570d23bd4f7373b2bcb1516c
Raw fastq file containing sequence reads for L. borealis - (1 of 2). Original file was split into two files for upload to Dryad. Use 'cat' function to concatenate the two files... -
FISH experiments for line KS95H102
Zip file containing individual tif files of blue (DAPI) green (FITC) and red (Alexa594) fluorescence taken on Zeiss or Nikon epifluorescence microscope. File name give Slide... -
processed_data.tar.gz
This file contains all the analysis files except raw Illumina data (available as a separate file) and raw Oxford Nanopore read in FAST5 format. As FAST5 files require Oxford... -
dedup_wf_001--965e8be9bd41c08528741d030583598a
A zip file containing two data files plus a third text file containing descriptions of the data files. See file "File annotations.txt" included int the archive for more... -
dedup_wf_001--2216a7c17adb929d62dc741c6ed299e0
The Nexus format file for the Bayesian inference analysis -
FISH experiments for line N02Y5075
Zip file containing individual tif files of blue (DAPI) green (FITC) and red (Alexa594) fluorescence taken on Zeiss or Nikon epifluorscence microscope. File name give Slide code... -
ToothMorph
ToothMorph is a zipped directory which includes all code, csv files, data matrices, and analyses used in this manuscript. Details are included in a readme file within this... -
C_nidiformis_polygon_file
Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.
