25 items found

Types: software Tags: Developmental Biology Molecular Biology Space Science

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  • software

    RECAP Platform

    RECAP is a commercial platform that integrates satellite remote sensing and user-generated data into added value services, co-designed and co-created by public authorities,...
  • software

    Poly-(3-hexylthiophene) Model and Code for Molecular Dynamic Simulations

    Here we present files necessary for simulating our united-atom poly-(3-hexylthiophene) model in molecular dynamics. The input file "P3HT_Blends.py" acts a wrapper...
  • software

    filter_fasta.py

    Usage: ./filter_fasta.py [path to input dir] [path to accepted taxon list]. Input files are expected to be in fasta format. The script will traverse all files in the input dir,...
  • software

    r37980778c78--8c73f636e8505583a54954c540185456

    Pretrained weights for TractSeg for output type "TOM".
  • software

    r37980778c78--905748fea9521b1bf8cb506b658c4d2b

    This file contains all the scripts and formated data that were used for the ms entitled "The quiescent X, the replicative Y and the Autosomes" by Achaz et al. The biorxiv...
  • software

    TractSeg pretrained weights - tract_segmentation

    Pretrained weights for TractSeg for output type "tract_segmentation".
  • software

    TractSeg pretrained weights - endings_segmentation

    Pretrained weights for TractSeg for output type "endings_segmentation".
  • software

    r37980778c78--9155fc8f5584b9bb5351aac10365452e

    This file or directory contains supplementary material (code) for Chapter 7 in 'Modeling excitable tissue - the EMI framework' by A. P. Buccino, M. Kutcha, J. Schreiner, and K....
  • software

    MitoS segmentation tool (GPU) for Linux

    The MitoS segmentation tool (GPU) is an easy-to-use GUI-based segmentation tool that enables biologists to use the pretrained deep learning model MitoSegNet to segment...
  • software

    r37980778c78--00baa46e5caf3a74c49212b41e8060d8

    Pretrained weights for TractSeg for output type "tract_segmentation".
  • software

    r37980778c78--595e944a7eccb1ac00203252e51304c3

    Pretrained weights for TractSeg for output type "TOM".
  • software

    Worst-Case Analysis of Digital Control Loops with Uncertain Input/Output Timing

    Code and data for the publication "Worst-Case Analysis of Digital Control Loops with Uncertain Input/Output Timing" by M. Gaukler and P. Ulbrich at ARCH2019 (Workshop...
  • software

    github.com/denis-yuen/bcellmagic

    B cell repertoire analysis pipeline with immcantation framework. Usage: The typical command for running the pipeline is as follows: nextflow run...
  • software

    RFixer: a tool for repairing complex regular expressions using examples

    This artifact contains the virtual machine image that has RFixer installed. RFixer is a tool for repairing complex regular expressions using examples. Given an incorrect...
  • software

    Aurora Galaxy Tools: Using R Markdown as a framework for Galaxy tool development

    While many biologists are able to run sophisticated bioinformatic analysis using Galaxy, it is not always clear how well they understand the role of each tool in a workflow or...
  • software

    r37980778c78--41385935c80cd8eb2bd730a527da7e12

    The MitoS segmentation tool (CPU) is an easy-to-use GUI-based segmentation tool that enables biologists to use the pretrained deep learning model MitoSegNet to segment...
  • software

    r37980778c78--4e6228de4289125c5ca85af9a62b93a8

    Pretrained weights for TractSeg for output type "endings_segmentation".
  • software

    r37980778c78--20e4c4133c9fe8824a467a46ddf8a289

    "methylSCOPA" software. The files included in this submission are equal to those in "10.5281/zenodo.1137694" -- the only difference between the two submissions is that the...
  • software

    Wikidata-Toolkit RDF diff comparision

    Dateien zur Reproduktion eines Vergleichs zwischen Wikidata-Toolkit und Wikidata RDF-Exporten. Die beiden Dumps, welche verglichen wurden: JSON:...
  • software

    Polaris: A Separation Logic For Concurrent Randomized Programs

    This is the archived artifact associated with the paper " A Separation Logic for Concurrent Randomized Programs" by Joseph Tassarotti and Robert Harper. The...