37 items found

Types: software Tags: BIDS fMRI

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  • software

    SAMRI — Small Animal Magnetic Resonance Imaging

    SAMRI (Small Animal Magnetic Resonance Imaging) - pronounced "Sam-rye" - provides fMRI preprocessing, metadata parsing, and data analysis functions and pipelines....
  • software

    r37980778c78--a9c481c4cecfcd17df0427481fcb6f3d

    [FIX] Adopt new FreeSurfer (v6.0.1) license mechanism (#787) [ENH] Output affine transforms from original T1w images to preprocessed anatomical (#726) [FIX] Correct headers in...
  • software

    NiBetaSeries: task related correlations in fMRI

    ## Release Notes Thanks to @PeerHerholz and @njvack for their contributions on this release. Special thanks to @snastase for being a great reviewer and improving the project...
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    r37980778c78--0180094dcbd1a20e6d0597defe3ac3c1

    Release Notes Bugfixes, an additional iteration over Sentry reporting and some relevant ME-EPI updates (with thanks to @emdupre). CHANGES [ENH] Update ME-EPI workflow to...
  • software

    poldracklab/fmriprep: 1.0.2

    CHANGES [FIX] Grouping runs broke FMRIPREP on some datasets (#916) Thanks to @emdupre for fixing this.
  • software

    Poldracklab/Fmriprep: 1.0.12

    Release Notes A long overdue release. This release integrates the great work of @mgxd to provide results in the CIFTI/grayordinates format for surface-based analyses. It also...
  • software

    r37980778c78--222602e8cc0b5c6ee00d4ab7d574f7be

    What's Changed Migrations catchup (#651) @adelavega Have report tooltip follow same display rules as rest of anlysis buil… (#647) @rwblair Bump werkzeug from 0.12.1 to 0.15.3...
  • software

    poldracklab/fmriprep: 1.0.4

    Release notes This release fixes minor issues found during Testing Phase 2, and gives a solution to some execution errors derived from Nipype latest changes. CHANGES [FIX] Pin...
  • software

    r37980778c78--4592c7a00885d2b1a2df514ca34b8b00

    Release Notes This release comes with many updates to the documentation, a more lightweight SignalExtraction, a new dynamic boilerplate and some new features from Nipype....
  • software

    Poldracklab/Fmriprep: 1.0.0

    Release notes FMRIPREP 1.0.0, codename "BOLD raccoon", is the first official release of FMRIPREP. FMRIPREP "BOLD" is the outcome of a thorough testing process to assess that...
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    r37980778c78--4fce36bddcb9b415813a558862edaf62

    Release Notes Various documentation and testing changes. We will be using readthedocs going forward and not "doctr" CHANGES [FIX] Remove high_pass references from...
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    r37980778c78--271823905be84b59a006614dc30e31f3

    [ENH] Add inverse normalization transform (MNI -> T1w) to derivatives (#754) [ENH] Fall back to initial registration if BBR fails (#694) [FIX] Header and affine transform...
  • software

    r37980778c78--5c387bd0cc26b6da1dde8c13e683ac91

    Release Notes A hotfix release addressing issues related to TemplateFlow for Singularity users. CHANGES FIX: Make sure --cifti-output requires at least one of fsaverage{5,6}...
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    r37980778c78--35243bcc7ce73047f2680e19b023edc8

    Release notes Hotfix to a problem identified in the "PEPOLAR" susceptibility distortion correction path. With thanks to @danlurie for contributions. CHANGES [MAINT] Update...
  • software

    Hbclab/Nibetaseries: V0.2.1

    Release Notes Large thanks to everyone at neurohackademy that helped make this a reality. This release is still a bit premature because I'm testing out my workflow for making...
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    r37980778c78--d334876b60542b9666f07587c5396368

    Release Notes This release incorporates Nipype improvements that should reduce the chance of hanging if tasks are killed for excessive resource consumption. Thanks to Elizabeth...
  • software

    r37980778c78--85fcd935fcf402050199d1d683651019

    Release notes This release is almost completely devoted to fix the memory-related issues that kept appearing in the issue tracker (#164, #225, #657, #688, #766, #799, #801,...
  • software

    poldracklab/fmriprep: 1.0.6

    Release notes This release addresses the major issues arisen from finishing Testing Phase 2 (see https://github.com/poldracklab/fmriprep/milestone/19) in combination with the...
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    r37980778c78--398eccf53d7dd607b9c8628c04dade77

    Release Notes This has been a busy month for NiBetaSeries. We have two more methods for calculating betas (LSA and FS), and LSS has been modified to account for separate...
  • software

    poldracklab/fmriprep: 1.3.0.post3

    Release Notes Hotfix release intended for Docker users, smoothing the experience of TemplateFlow when using the -u UID flag is necessary. CHANGES [ENH] TemplateFlow + docker...