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Singularity 2.5.2 - Linux application and environment containers for science
Containers are proving to be an extremely valuable technology for science; Singularity focuses container approaches, workflows, and methods to create portable environments... -
labordynamicsinstitute/ldi-replication-dataprep: LDI Replication Lab Data Pre...
These programs prepare and clean the raw data from the LDI Replication Lab. The output is manually curated on Zenodo, and used for downstream analysis. -
bigSCale2
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data. -
Parameter Calculator
The software "Parameter Calculation" serves as a demonstration for calculating parameters as part of my bachelor thesis "Learning Analytics in Flipped Classroom -... -
r37980778c78--83eeb9e883cdde064a3a12cf066cb233
This repository contains codes for grey-box identification of nonlinear dynamical systems using TensorFlow and Keras. The core components are a set of custom Keras layers. The... -
r37980778c78--35b6420c5aa6a2709671b953e6084820
This data visualization project explores flight Issues and popular airlines. Flight Issues: Delay and Safety and Popular Airlines: Revenue and Passenger counts are visualized... -
r37980778c78--df6f4c2d732393e7174268128a30e75f
magicCalling v0.0.2 magicCalling is an R package for converting raw marker data into marker alleles. It implements two novel methods. The first is a model-based clustering... -
phenoCDM: Continuous Development Models for Incremental Time-Series Analysis
Using the Bayesian state-space approach, we developed a continuous development model to quantify dynamic incremental changes in the response variable. While the model was... -
r37980778c78--eea7fae69e0cfe48e9152086874ce993
Infectious Disease Model that simulates the dynamics of the variables associated with the model -
R scripts for "Noise model estimation with application to gene expression"
R - scripts for the paper: Zhornikova P., Golyandina N., Spirov A. "Noise model estimation with application to gene expression" -
r37980778c78--501e84ba149f171a5ae75c6ed6d95931
This package is composed by four parts: A MATLAB implementation of the partial information decomposition (PID) for distributions over three random variables using the... -
r37980778c78--80828214b4e815505a674200d8776c0e
Submission to the exact treedepth track of PACE 2020 by Tuukka Korhonen (University of Helsinki). The submission is based on an algorithm that branches on (small) minimal... -
Psearch
IDL routines for Period search with hybrid algorithm. IDL routines for period finding with multiband data that are sparsely sampled. Hybridizes Lomb-Scargle and Lafler-Kinman... -
r37980778c78--c2fa0757cda2f6eb8e5f45deac469b6c
The zipfile contains 4 pieces of software implemented as a part of the PhD Thesis "Certifying Planning Systems: Witnesses for Unsolvability". 1) verifier certificate: A... -
Scripts and data used in "Exon Capture Optimization in Large-Genome Amphibians"
These are the scripts used to analyze the data and create the figures in the paper "Exon Capture Optimization in Large-Genome Amphibians." -
A CFD tool using C-programming and .scm files to formulate dynamic switching ...
A more structured and generic version. The architecture is illustrated by a flowchart. The uploaded files makes it possible to control CFD simulations (Fluent) through a MATLAB... -
tidybayes: Tidy Data and Geoms for Bayesian Models
Various geoms and stats have been merged together under the geom_slabinterval() and stat_slabinterval() "meta-geom" (#84). This has enabled a bunch of new geoms to... -
r37980778c78--95fd8af8a4b276158009c75aeab8ec5a
This is the second public release for Application Skeleton - a tool to generate skeleton applications that mimic a real applications' parallel or distributed performance at a... -
Analysis scripts for: Insights about variation in meiosis from 31,228 human s...
This repository holds scripts that call crossovers, determine ploidy, and perform various other analyses for data generated via Sperm-seq. The methods from the... -
Cook codebooks from survey metadata encoded in attributes in R
codebook 0.7.4 Additions Function new_codebook_rmd creates a new file in your working directory with a codebook template. Function metadata can be used to set dataset-level...
