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dedup_wf_001--38f539173d598f3c4cfeb58b08c443e2
This file contains the processed NGS data associated with the publication. Sequences have been collapsed to unique haplotypes and filtered for analysis. If you wish to use these... -
Appendix_Raw_EVI-data
This file contains the raw EVI (Enhanced Vegetation Index) data from the study -
dedup_wf_001--d8ddedb7b549194c8709ab9f0e9d3f24
Trimmed SNP data from Joshua trees (Yucca brevifolia and Y. jaegeriana) formatted for analysis in Arlequin. Text file saved as tab-separated values. -
Specimen Data Spreadsheet for PLos One
This Excel spreadsheet gives the raw data for the morphology measurements and mechanical testing measurement. -
Bliss_bryo_embl113.tag
The unique P6 loop trnL sequences produced by amplification of DNA with the primers bryo_P6F_1* & bryo_P6R as detailed in the associated publication. The data was recovered... -
Output of genus assignment analysis
This directory contains the FASTA file output of the genus assignment analysis for each orthogroup that was identified using OrthoMCL (1,502 orthogroups in total). -
F2CSjoinmap
Joinmap formatted input file for an F2 S. chrysanthemifolius x S. squalidus mapping family -
Information for BAM files on NCBI SRA
BAM files for 117 wolves, separated into genic and neutral regions. See paper text for details on alignment and mapping pipeline. -
remove_header script
This python script removes the header row from each csv file that is listed in column 1 of an input csv file. -
dedup_wf_001--87b06dd0f7ab400b870b79d42e8e25d5
This file contains recapture data for individual enclosure replicates. For each enclosure replicate, data are included on when the trial was run, which enclosure the trial was... -
dedup_wf_001--a9400776bb22c7e11f4d6fb9d9cbb5a0
The table shows the number of aggressive events by focal Hypsophrys nicaraguensis territory owners. The ID of the territory, sex of each focal individual, stimulus type, order... -
Structure infile
File contains input data file for Structure analysis. In first column is sample ID (nz=New Zealand, uk=United Kingdom, mc=Macreas flat, t=Twizel, ml=Molesworth, p=Palemrston, A=... -
Reichenbach_etal_Cochlostoma_supplemetary_datafile
Datafile used for quantitative analyses of males and females Cochlostoma septemspirale. It contains the measurements for each individual. The file is saved in a tabbed text... -
Lemmus.partial.inputMrBayes
Input file to MrBayes for analysing the partial dataset, using Mictotus as an outgroup -
Physical and spatial data (n=111 atolls)
The data contains physical and spatial measurements, the number of endemic and indigenous species per atoll, and some criteria used to estimate the level of human impact. -
Litter decomposition
Litter decomposition data is the complete database for litter dynamics analysis. Other files with soil moisture included in the name were used for soil moisture analysis or to... -
De-multiplexing Functions
Functions in R for de-multiplexing (assigning sample identify for each read using the sequence barcode at the beginning of the read) the raw sequencing data. The raw data itself...
