Vargula tsujii. 454 transcriptome data. 33 Bodies minus eyes. Two separate runs of 454 from same RNA. Raw sequence reads, including adaptors. Adaptor: AAGCAGTGGTATCAACGCAGAGT....

Mimulus co-occurrence matrix for 100 meter scale.

The ZIP archive contains the files used to identify, design, and test probes targeting conserved loci in Lepidoptera. The -design-steps.md file is a description of the design...

Supplementary Information: BAMM Assessment

Measurements of OD and fluorescence intensity in the monoculture experiment for 12 bacterial strains. Column names represent: Raw data Number, Microplate Row, Microplate Column,...

Classification and demographic trend data for all study species.

XML file for running the analyses with the Brassicaceae dataset (supermatrix approach) in BEASTv2.2 (Bouckaert et al., 2014) using the four Brassicales fossil scheme for...

Metadata for all samples sequenced, including samples excluded from study as described in paper.

Mimulus co-occurrence matrix for 30 meter scale.

Puriana sp. 454 transcriptome data. from Bodies minus median eyes. Pooled multiple animals together. Raw sequence reads, including adaptors. Adaptor: AAGCAGTGGTATCAACGCAGAGT....

Genetic effects of the sQTLs and scQTLs.

Euphilomedes morini. 454 transcriptome data. from compound eyes. Pooled ~50 animals together (100 eyes). Raw sequence reads, including adaptors. Adaptor:...

Excel spreadsheet with raw counts of correct, incorrect, and unknown relationships for all runs of equal and implied weighting, as well standardized counts of implied weighting...

1309 species included

Online Appendix 3 - ML results, Excel file.

RTI

Input and output files of BAMM analyses conducted under six different values for the prior on the expected number of diversification shifts (0.1, 1, 5, 10, 50, 100). (1) Control...

Web Ontology Language (OWL) representation of descriptive character matrix from [Mullins et al. 2012] using the Comparative Data Analysis Ontology (CDAO). Character states are...

Ochrophyta_family_pH_13c_raw_data

This is a nexus file that includes alignments of mitochondrial DNA sequences that were analyzed in this study