Items - RISIS2 Open Data VRE Catalogue

dataset

Selection experiment data

This file contains adult survival data and juvenile population counts during the course of the selection experiment described in the associated publication. The proportion of...

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dedup_wf_001--0d70ba401028555fe4c68840718be5fd

Standard input file for BLAST2GO. This file can be loaded directly into .jnlp executable file downloaded from BLAST2GO website. Includes BLASTX results against NCBI’s...

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Information for BAM files on NCBI SRA

BAM files for 117 wolves, separated into genic and neutral regions. See paper text for details on alignment and mapping pipeline.

dataset

dedup_wf_001--417836f8e8784abda81d93cfec196e64

Genotypes for European lines of A. thaliana (Chromosome 1) genotyped at a density of one SNP per kb. These data are used in our tutorial example 2 and supplementary file 2. Data...

dataset

TLR1LB_All_genotypes2015

This is the output file with Phase results for TLR1LB in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad

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Information on SNPs identified from transcriptome data (vcf file)

SNPs identified from transcriptome alignment files in variant call format. SNPs were identified using GATK. Parameters and filters for calling SNPs are listed in header....

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Alternative splice events identified in Peromyscus leucopus transcriptome

This FASTA file contains two sequences for each alternative splicing sequence, labeled as upper and lower splice, that was identified in the Peromyscus leucopus transcriptome.

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selection data

Data file containing measurements of selection gradients and differentials

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dedup_wf_001--8d743f1a02019879290fd72655c50f82

cmr data used to measure and visualize selection on wing length

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RefSNP_annotation_Dryad_KellerOlson

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input_Bvalues

B-value map that was used as input file for SweepFinder2. Original data from: McVicker G, Gordon D, Davis C, Green P (2009) Widespread genomic signatures of natural selection in...

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SPAD data

This file describes the SPAD data and contains the SAS code for analyses

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TLR3_All_genotypes2015

This is the output file with Phase results for TLR3 in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad

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grseasRasters

Compressed directory with growing season condition rasters. Data sources and calculation details are found in the Molecular Ecology article (Lasky et al. 2012). These rasters...

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