30 items found

Organisations: RISIS2OpenData Tags: 80699 Information Systems not elsewhere classified Ecological Genetics Natural Selection and Contemporary Evolution

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  • dataset

    dedup_wf_001--0d70ba401028555fe4c68840718be5fd

    Standard input file for BLAST2GO. This file can be loaded directly into .jnlp executable file downloaded from BLAST2GO website. Includes BLASTX results against NCBI’s...
  • dataset

    dedup_wf_001--417836f8e8784abda81d93cfec196e64

    Genotypes for European lines of A. thaliana (Chromosome 1) genotyped at a density of one SNP per kb. These data are used in our tutorial example 2 and supplementary file 2. Data...
  • dataset

    Information on SNPs identified from transcriptome data (vcf file)

    SNPs identified from transcriptome alignment files in variant call format. SNPs were identified using GATK. Parameters and filters for calling SNPs are listed in header....
  • dataset

    Alternative splice events identified in Peromyscus leucopus transcriptome

    This FASTA file contains two sequences for each alternative splicing sequence, labeled as upper and lower splice, that was identified in the Peromyscus leucopus transcriptome.
  • dataset

    dedup_wf_001--8d743f1a02019879290fd72655c50f82

    cmr data used to measure and visualize selection on wing length
  • dataset

    RefSNP_annotation_Dryad_KellerOlson

    RefSNP_annotation_Dryad_KellerOlson
  • dataset

    grseasRasters

    Compressed directory with growing season condition rasters. Data sources and calculation details are found in the Molecular Ecology article (Lasky et al. 2012). These rasters...
  • dataset

    WythamCNV

    A list of CNVs in the unfiltered Wytham Woods dataset
  • dataset

    dedup_wf_001--8a37bdf31208bf12c5954cd7b260e491

    See Readme file
  • dataset

    110506_SN365_A_s_8_2_seq_GKW-36.txt.gz.004

    110506_SN365_A_s_8_2_seq_GKW-36.txt.gz.004
  • dataset

    110506_SN365_A_s_8_1_seq_GKW-36.txt.gz.001

    110506_SN365_A_s_8_1_seq_GKW-36.txt.gz.001
  • dataset

    perl script to run quantiNEMO simulations

    This is a wrapper script that I wrote to run quantiNEMO to generate the simulated data files that were analyzed in the paper.
  • dataset

    110506_SN365_A_s_8_2_seq_GKW-36.txt.gz.003

    110506_SN365_A_s_8_2_seq_GKW-36.txt.gz.003
  • dataset

    Miyagi et al_Appendix 1 file

    Miyagi et al_Appendix 1 file
  • dataset

    2497_indiv_phenotype

    2497_indiv_phenotype.txt file. This file contains the phenotypes used in the analysis. Note that phenotypes are not available for all genotyped individuals. For more information...
  • dataset

    dedup_wf_001--0101870255c7e1d6ac878088505eea75

    All the data files and metadata files required to replicate the results of this paper. Scripts and readme are available on github https://github.com/ACharbonneau/creepy-barnacle
  • dataset

    110506_SN365_A_s_8_1_seq_GKW-36.txt.gz.003

    110506_SN365_A_s_8_1_seq_GKW-36.txt.gz.003
  • dataset

    2497_indiv_5591_markers

    The .ped file is a file of genotypes in plink style (see http://pngu.mgh.harvard.edu/~purcell/plink/). The column headings are: Family ID, Individual ID, Paternal ID, Maternal...
  • dataset

    SNPData

    File containing the SNPs for all the studied populations
  • dataset

    Simulated Data

    ################################################## Introduction ################################################## The data was simulated with ms (Hudson, Bioinformatics,...