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Skrip_et_al-data_REPOSITORY
This file contains data used to perform all statistical analyses; the last sheet of the workbook contains metadata describing the data in all other sheets. -
Genotype data
The TalentiEtAl_2017.ped file contains the unphased genotype data for all the 929 animals described in the paper: "Genomic analysis suggests KITLG is responsible for a roan... -
Level-2_Germany
Structure data file for level 2 analysis. C. arvensis- and U. dioica-associated populations of H. obsoletus from Germany. -
Scripts associated with the bioinformatics pipeline
Scripts associated with the bioinformatics pipeline -
Y-STR haplotypes and haplogroups in Partecipanza and S. Giovanni in Persiceto...
Y-STR haplotypes and haplogroups in Partecipanza and S. Giovanni in Persiceto samples -
Outlier analysis data and scripts
Compressed archive contains R script for identifying clusters in outlier SNP regions. Outlier SNP data is also included -
XPCLR selection test: Script prepares ms data and runs XPLCR
XPCLR selection test: Script prepares ms data and runs XPLCR -
Orozco-terWengel_data
Microsatellite data for 21 natural populations of Drosophila melanogaster. The file is in MSA format (Dieringer D, Schlötterer C (2003) Microsatellite Analyser (Msa): A Platform... -
Environmental variables
Values of the physicochemical variables and the biotic indices -IBMWP (Iberian Biological Monitoring Working Party) and IMMi-T (Iberian Mediterranean Multimetric Index)- used to... -
dedup_wf_001--c708ae35098f72962ecfe567b4aa5547
ped and map files for Flor and wine populations. Files are prepared from phased vcf file . Data used with plink with options --ld-window 1000 --ld-window-kb 50... -
Level-4_non-GermanPops
Structure data file for level-4 analyis. All non-German C. arvensis- and U. dioica-associated populations of H. obsoletus -
Microsatellite Dataset
Microsatellite information for three different populations, O. histrionica, pHYB (putative hybrid) and O. lehmanni. Data for seven microsatellite markers, two columns per locus,... -
Data XPCLR of Wine and France and Hungary Flor strain
XPCLR selection test: Data for XPCLR of Wine and French (Jura) and Hungarian Flor strain recombination rate 403 M. Window= 0.1 cM, window 1kb -
Tuber_melanosporum_60507SNPs_resource
This file in gff format corresponds to the list of the 60,507 SNPs in genomic region putatively free of selection. These SNPs were used for BEAST and maximum likelihood... -
Level-1_Bacharach
Structure data file. C. arvensis- and U. dioica-associated populations of H. obsoletus sampled over five consecutive years (2005-2009) at the syntopic site Bacharach, Germany
