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Additional file 5: of Dissection of the molecular bases of genotype x environ...
Table S4. Phenotypic plasticity at the population level. The first line indicates M15_Sk average phenotypic values and the two other indicate the effect of each environmental... -
UK map file
plink-style map file with marker locations for the UK dataset.The map file is in an amended plink format with chromosome in column 1, SNP name in column 2, cM position in column... -
dedup_wf_001--b6f0d44ae97dff4c2e5818a881c6555d
Separate sheets in these excel files contain trait information for the phenotyped and genotyped animals, along with important fixed and random effects fitted in the mixed... -
dedup_wf_001--85408b68721de454024316cbbef69e35
The table contains data on phenotypes for all individuals (IndID). Columns mUVhalf, nmUVmax, nmRedhalf, res358, res570 and res707 show data from spectrometric beak colour... -
validation-genotypes-ly.vcf
Genotypes of the 5 tag SNPs for the LY phenotype QLT peaks in the 18k validation animals. -
Quantitative trait loci (QTLs) for the number of pollen grains per anther (NP...
Quantitative trait loci (QTLs) for the number of pollen grains per anther (NPG) and apparent pollen fertility (APF) in ‘Okitsu No. 46’ × ‘Okitsu No. 56’ population obtained by... -
GWAS_pop_data
Chromosome 5 Illumina BovineHD genotypes and phenotypes for the milk fat percentage GWAS population. -
Additional file 3: of Mapping QTLs and association of differentially expresse...
The list of differentially expressed genes identified between CK60 and China17 using RNA-seq. (xls 169 kb) -
2497_indiv_phenotype
2497_indiv_phenotype.txt file. This file contains the phenotypes used in the analysis. Note that phenotypes are not available for all genotyped individuals. For more information... -
2497_indiv_5591_markers
The .ped file is a file of genotypes in plink style (see http://pngu.mgh.harvard.edu/~purcell/plink/). The column headings are: Family ID, Individual ID, Paternal ID, Maternal... -
r37980778c78--003b8e54ac0641c921a50c57c052f383
Seedlessness is one of the important traits in citrus breeding. Male sterility derived from Satsuma mandarin (Citrus unshiu) has been used in Japanese citrus breeding programs... -
dedup_wf_001--89d98c3b35ddf06a81e2af7656f72d4f
Detailed information on genetic distances and linkage phase between adjacent SNP markers in the paternal linkage map constructed for P. tremula intra-specific cross. (xlsx, 428Â... -
RNAseq_pop_imputed_seq_data_with_gap_vars
Chromsome 5 imputed sequence and gene expression data used for eQTL mapping - with reference gap variants -
validation_results_LY
The association statistics for the 5 LY QTL peaks in the 18k animal validation set. -
SNPeffect
Description: comma-seperated values file listing all SNPs between the parent strains of the study, 4CAR1 and T73 with potential effect. The effects of SNPs on genes was...