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R script for co-occurrence stats and figures
This R script performs statistical analyses and generates figures used in Ecology Letters paper American Journal of Botany paper "No association between plant mating system and... -
Tempelton's Tests files
This zipped folder contains all files used for the Templeton's test. This folder is organised in subfolders, whereas "1 - Pasimony Analysis Input files" contains the... -
Stein et al. 2015 Fig. 1 in newick file format
Phylogenetic hypothesis resulting from analysis of the molecular data matrix in the newick file format. -
fossil_calibration_analyses(BEASTv2.2)
XML file for running the analyses with the Brassicaceae dataset (supermatrix approach) in BEASTv2.2 (Bouckaert et al., 2014) using the four Brassicales fossil scheme for... -
BAMM_files
Input and output files of BAMM analyses conducted under six different values for the prior on the expected number of diversification shifts (0.1, 1, 5, 10, 50, 100). (1) Control... -
mtDNA_simple
This is a nexus file that includes alignments of mitochondrial DNA sequences that were analyzed in this study -
Input file NDnl analysis
This is the XML file which configures all parameters for the BEAST program for the Bayesian MCMC analysis using the node dating approach with narrow prior calibration densities.... -
Stein et al. 2015 Fig. 1 in nexus file format
Phylogenetic hypothesis resulting from analysis of the molecular data matrix in the nexus file format. -
Tree Files
-Astral_Bootstrap.tre newick formatted 100 bootstrap replicates from the COMPLETE ASTRAL-II species analysis -Gene_Trees_Full.tre newick formatted 498 "best" gene trees from... -
Supplementary file 4
RAD genotype data for the full set of 4,969 loci in genepop format. Sample names correspond to the 'Alias' column in Supplementary File 2. -
Appendix S1 - TNT files
Zip file containing all 100 matrices generated from our MK model of morphological change. -
dedup_wf_001--f3b2df5478ba536d4494a7dc9c361f8a
This file contains descriptions of all the files associated with this Dryad package. -
meta-analysis data
This systematic review and meta-analysis of non-randomized clinical trials aimed to explore functional correction training after Functional Movement Screen (FMS™) and the... -
analysis_script
This file contains the annotated analysis script. Once the appropriate working directory is set and libraries loaded, this script will reproduce the results reported in the paper. -
Quattrini_anthozoa_baits_V1
Fasta file with the designed baits for anthozoan target-capture enrichment. Potential Symbiodinium loci have been removed. -
Input file NDns analysis
This is the XML file which configures all parameters for the BEAST program for the Bayesian MCMC analysis using the node dating approach with narrow prior calibration densities....
