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2497_indiv_5591_markers
The .ped file is a file of genotypes in plink style (see http://pngu.mgh.harvard.edu/~purcell/plink/). The column headings are: Family ID, Individual ID, Paternal ID, Maternal... -
Simulated Data
################################################## Introduction ################################################## The data was simulated with ms (Hudson, Bioinformatics,... -
Power analysis - simulations with sel. coeff. of 0.05
A Matlab file containing data related to the power analysis. Simulations of the evolution of a polygenic trait with the multilocus selection coefficient set at 0.1 (de Vladar... -
dedup_wf_001--01488b983f5230a7efe236bfb3b5b746
Genetic data (G) and environmental data (E) infiles that were analyzed in this manuscript. These data sets were simulated in R according to the Wright-Fisher model with... -
Demographic estimation data - simulated BFs chromosome X
A Matlab file containing Bayes factors calculated on simulated data from the demographic estimation analysis by means of Approximate Bayesian Computation. Contains X chromosome... -
Microsatellite_data
Explanations for datafile "Microsatellite data.xls" This datafile contains microsatellite genotype information of Mastomys natalensis. General comment: "-9" describes a... -
Pairwise FST estimates for the X chromosome SNPs
A Matlab file containing 867049 X chromosome SNPs, their pairwise FST estimates, and P-values for each SNP derived from coalescent simulations. -
dedup_wf_001--495169c0b1b868a870778992844b4c8b
FASTA file. DNA sequences of MHC class II alleles which have been validated as true alleles according to criteria described in the paper, but have been detected only in a single... -
dedup_wf_001--1d446a7b3f8a61758562513f3786137d
Microsatellite data of the individuals included in the study. The first column entitled population includes the abbreviation for population affinity of the individuals, see Fig.... -
Primary Data File - Embryonic Survival and Development
Primary Data File used in analysis of effects of salt treatment and female identity on newt embryonic survival and development -
dedup_wf_001--36e553453ee21a77b526be278a586897
A Matlab file containing data related to the power analysis. Simulations of the evolution of a polygenic trait with the multilocus selection coefficient set at 0.1 (de Vladar... -
Cape Race wild populations in captivity_obs_freq(mortality_by_sex_by_pop)
Cape Race wild populations in captivity_obs_freq(mortality_by_sex_by_pop) -
Contig sequences for P. leucopus transcriptome (fasta file)
Transcriptome contigs assembled from raw SOLiD 5500 xl sequencing reads using Trinity. Only contigs with high-quality open reading frames identified from Transdecoder and... -
Family Phenotypes
Common garden phenotype results at the family level used in the phenotype-genotype analyses -
wrapper perl scripts for simulations
This compressed directory contains a set of perl scripts that were used to run the R Wright-Fisher simulations and generate the data sets analyzed in this paper.
