36 items found

Licenses: License Not Specified Types: software Tags: Cancer Cell Biology Genetics Organisations: RISIS2OpenData

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  • software

    Jstacs/Jstacs: Jstacs release for the ENCODE-DREAM Paper

    Release for documenting the source code accompanying the paper about our method in the ENCODE-DREAM challenge. Sources specific to that project reside in the projects.dream2016...
  • software

    r37980778c78--b43541b1cc70854e9a00ca9b821c0e62

    Initial release of MI-bicliques: Algorithms for enumerating maximal induced bicliques. MI-bicliques is a C++ software package implementing algorithms for efficiently enumerating...
  • software

    CLARIAH/grlc 1.1

    grlc is a lightweight server that takes SPARQL queries curated in GitHub repositories, and translates them to Linked Data Web APIs. This enables universal access to Linked Data....
  • software

    r37980778c78--a3d356232a48b9dea10b29c7bef0c2a2

    This is the first release of CRes and contains: source code and documentation for CRes high-resolution .pdf files for figures from Watson et al. (2019) JVGR article script...
  • software

    greenelab/continuous_analysis: Continuous Analysis v1.0

    This release is associated with the in press version of the continuous analysis manuscript.
  • software

    Freesasa 2.0

    FreeSASA is an open source library and command line tool to calculate the solvent accessible surface areas of protein molecules. The library is as fast and accurate as existing...
  • software

    Regularised ADMM reconstruction algorithm for X-ray CT (ADMM-tomo)

    Regularised ADMM-type iterative reconstruction algorithm for X-ray tomographic reconstruction. Software highlights: Tomographic projection data are simulated without the...
  • software

    pBroad and gFit -- Pressure Broadening Global Line Fitting Suite

    Hosted at https://gitlab.com/Eiceman/pbroadgfit Originally these two suites of programs were developed for the paper "Re-evaluation of ortho-para-dependence of...
  • software

    r37980778c78--5de6433687b0d69fc8d690d78e5a165f

    This release adds the ties argument to sksurv.linear_model.CoxPHSurvivalAnalysis to choose between Breslow's and Efron's likelihood in the presence of tied event times....
  • software

    Software for paper: Two is better than one: Studying host plant/fungal compat...

    These files represent software I developed as part of the publication: Two is better than one: Studying host plant/fungal compatibility by using a hybrid pathogen. One file is...
  • software

    jamesrhester/PyFormatTransformer 0.9

    This software is described in Hester, J.R. (2016) ""A Robust, Format-Agnostic Scientific Data Transfer Framework"  The Data Science Journal 15:12,...
  • software

    AdamEAhmed/PCR-Analyze: R PCR Script

    An R script repository accompanying the abstract 'A Quantitative Polymerase Chain Reaction Analysis Solution in R'
  • software

    gap-packages/Semigroups: 3.0.2

    This is an minor release fixing some minor issues in the last release.  The following issues were resolved: Issue 330 InversesOfSemigroupElement some times returned an...
  • software

    r37980778c78--7347f39c84e27546962881b6a181c9c4

    v1.3.0 was released on 11/05/2016 Major Changes Added functionality for downloading and preprocessing MODIS collection 006 datasets. For products with both 005 and 006...
  • software

    r37980778c78--a7c02f4f78185beb8fca76ce8342e05e

    This project visualizes UMD's Global Terrorism Database (GTD). The GTD is composed of over 192,000 terrorist attacks between 1970-2018. The study utilizes Python for...
  • software

    r37980778c78--c7cfdab65444d59b53454df4dad08fa9

    This simplified photochemistry mechanism contains the essential reactions related to ozone formation: NOx chemistry, VOC chemistry, formation of a peroxy radical from VOC...
  • software

    snewhouse/switch-os: 17.07.v0.1

    Seamlessly switch between host OS and guest OS using Docker :whale: . Inspired by: oswitch VERSION: 17.07.v0.1 AUTHOR: Stephen Newhouse stephen.j.newhouse@gmail.com...
  • software

    r37980778c78--d334876b60542b9666f07587c5396368

    Release Notes This release incorporates Nipype improvements that should reduce the chance of hanging if tasks are killed for excessive resource consumption. Thanks to Elizabeth...
  • software

    "Mouse Brain Atlases" Generator Workflows

    Scripts to build the mouse brain atlases collection used by the SAMRI software package and first published in the IRSABI article. The script fetches atlas data from verified...
  • software

    Data processing and analysis code for 'Detecting Textual Reuse in News Storie...

    These are the data preparation and analysis Jupyter notebooks accompanying Nicholls (2019) Detecting Textual Reuse at Scale, in the International Journal of Communication. The...