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Analysis pipelines included in "Conbase: a software for unsupervised discover...
This repository contains the analysis pipelines included in "Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read... -
Supplemental Material for Astrophysical Journal paper "Improved Coupling of H...
A Jupyter notebook containing several derivations of equations in the paper "Improved Coupling of Hydrodynamics and Nuclear Reactions via Spectral Deferred Corrections" -
A general proof certification framework for modal logic - Implementation
This archive contains the lambda-prolog implementation of a general proof certification framework for modal logic -
Parameter Calculator
The software "Parameter Calculation" serves as a demonstration for calculating parameters as part of my bachelor thesis "Learning Analytics in Flipped Classroom -... -
TractSeg pretrained weights - endings_segmentation
Pretrained weights for TractSeg for output type "endings_segmentation". -
MitoS segmentation tool (GPU) for Linux
The MitoS segmentation tool (GPU) is an easy-to-use GUI-based segmentation tool that enables biologists to use the pretrained deep learning model MitoSegNet to segment... -
R scripts for "Noise model estimation with application to gene expression"
R - scripts for the paper: Zhornikova P., Golyandina N., Spirov A. "Noise model estimation with application to gene expression" -
Worst-Case Analysis of Digital Control Loops with Uncertain Input/Output Timing
Code and data for the publication "Worst-Case Analysis of Digital Control Loops with Uncertain Input/Output Timing" by M. Gaukler and P. Ulbrich at ARCH2019 (Workshop... -
github.com/denis-yuen/bcellmagic
B cell repertoire analysis pipeline with immcantation framework. Usage: The typical command for running the pipeline is as follows: nextflow run... -
Aurora Galaxy Tools: Using R Markdown as a framework for Galaxy tool development
While many biologists are able to run sophisticated bioinformatic analysis using Galaxy, it is not always clear how well they understand the role of each tool in a workflow or... -
PIConGPU 0.4.2: CPU Plugin Performance
This release fixes a performance regression for energy histograms and phase space plugins on CPU with our OpenMP backend on CPU. At least OpenMP 3.1 is needed to benefit from... -
twitterreport: Out-of-the-box analysis and reporting tools for twitter
Set of tools to download, process and analyze 'tweets', including methods for exporting the outputs through 'D3js'. -
MitoS segmentation tool (GPU) for Windows
The MitoS segmentation tool (GPU) is an easy-to-use GUI-based segmentation tool that enables biologists to use the pretrained deep learning model MitoSegNet to segment... -
Osm Street Blocks Extraction
This repository contains a Python script (Jupyter notebook) implementing extraction of street blocks from OpenStreetMap (or other sources of vectorial data) using PostGis. -
Analysis scripts for: Insights about variation in meiosis from 31,228 human s...
This repository holds scripts that call crossovers, determine ploidy, and perform various other analyses for data generated via Sperm-seq. The methods from the... -
Cytometry analysis pipeline for large and complex datasets (CAPX)
The Cytometry Analysis Pipeline for large and compleX datasets (CAPX) is workflow for discovery analysis of high-dimensional cytometry data. Specifically the CAPX workflow is... -
Crafty: Efficient, HTM-Compatible Persistent Transactions
This is the artifact for the paper "Crafty: Efficient, HTM-Compatible Persistent Transactions", which is set to be published in PLDI 2020. The artifact contains code,... -
Python for Power System Analysis (PyPSA) Version 0.10.0
Python for Power System Analysis (PyPSA) is a free software toolbox for simulating and optimising modern power systems that include features such as conventional...
