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dedup_wf_001--bf01533b74f5d1d9c59d087a1e3102f8
NEXUS file containing total concatenated mDNA, rDNA & nDNA and PAUP* 4.0 analysis commands from Jackson et al. ISE -
De-multiplexing Functions
Functions in R for de-multiplexing (assigning sample identify for each read using the sequence barcode at the beginning of the read) the raw sequencing data. The raw data itself... -
survival_data
We measured larval mortality for S. droebachiensis at 3 different temperatures (3, 10 and 21 °C) reared in 4-l culture jars (n = 3). Temperatures in the jars were maintained... -
Community_data
The community data files are bat abundance/absence matrices for the family Vespertilionidae and the genus Myotis. Community data for all bat taxa can be found at... -
Tayassu_pecari_KY987556_SeqData_Filtered_Collapsed.fastq
FASTQ file containing filtered, de-mulitplexed, and collapsed HiSeq (Illumina) sequencing reads corresponding to the Tayassu pecari enriched genomic library. See main... -
Hamilton_etal_DryadData2013
Compressed archive of data files and transcriptome assembly used in analysis. -
Trichomalopsis GC-MS raw data
CSV files containing information on the GC-MS data (GC: 7890A; MS: 5975C; Agilent Technologies, Waldbronn, Germany) for the Trichomalopsis outgroup samples, obtained with... -
Occurrence data.
Number of specimens of each species observed at locality stations TU 1422, 1215, and 1354. Counts include specimens questionably assigned to a given taxon. Total numbers of... -
Supplementary Table
Supplementary Table 1: Characteristics of the mitochondrial genome of two syntopic specimens of Arremon aurantiirostris from Panama (GMS 1179 and GMS 1180). Parenthetical... -
Sample metadata
Microbiome sample metadata. "SampleID" = unique identifier for a sequenced 16S rDNA amplicon pool corresponding to a single sample. "Name" = more descriptive unique sample name.... -
Results of principal component analysis.
Loadings, eigenvalues and cumulative amount of variation explained by four of the components (PC's) obtained from a PCA analysis using the log-transformed volume or the relative... -
Supplementary Data 1
Supplementary Data 1. Raw fossil data. Repository and Specimen indicate the collection in which specimen is held and its specimen number. Family, Subfamily, Tribe, Genus, and... -
Snowshoe hare skin transcriptome (raw)
This transcriptome was assembled from 15 skin samples, collected from 5 adult snowshoe hares undergoing spring moult. From each of the 5 individuals, we collected 3 skin... -
nonAdmix_nacanids_94indiv_unrel_noYNP_42Ksnps_wEcotypes.tfam
The corresponding TFAM file for the set of 94 unrelated individuals showing >50% assignment in structure. The first column of each line is the ecotype designation for each... -
Stein et al. 2015 Fig. 1 in nexus file format
Phylogenetic hypothesis resulting from analysis of the molecular data matrix in the nexus file format. -
3Files_Pecari_tajacu_SeqData_Filtered_Collapsed.fastq
FASTQ files containing filtered, de-mulitplexed, and collapsed HiSeq (Illumina) sequencing reads corresponding to the 3 Pecari tajacu enriched genomic libraries. See main... -
Data Analysis
This file contains all of the R code used in the analysis and to create the figures for this paper.
