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MEC-15-690-Dryad
This zip file extracts data used in Roy et al MEC-15-0690. The ".txt" file is the raw microsatellite scores in number of repeats formatted for the Convert.exe program. The... -
mtDNA alignment
Mitochondrial (COI) alignment of Parasemia plantains used in the paper "Temporal relationship between genetic and warning signal variation in the aposematic wood tiger moth... -
Structure infile
File contains input data file for Structure analysis. In first column is sample ID (nz=New Zealand, uk=United Kingdom, mc=Macreas flat, t=Twizel, ml=Molesworth, p=Palemrston, A=... -
isolation_by_distance
Genetic distance (FST/(1- FST)) versus geographic distance is plotted for all pairwise comparisons among populations of G. f. fuscipes in northern (A) or southern (B) Uganda. In... -
structure_input
This is a tab-delimited text file containing the nuclear marker genotypes at 9 microsatellite markers and 3 coding genes for 409 Radix snails from the core and extended... -
Migrate - SanPedro
MIGRATE-n file containing the microsatellite data (14 markers) of the freshwater fish Galaxias platei in the San Pedro system in Nothern Patagonia. The parmfile for this run is... -
bgc input file for house sparrow parental population (reference population) w...
input file for house sparrow parental population (reference population) when analysing autosomal loci separately in parental sympatry -
dedup_wf_001--66817b660c5aafb9d7466e488a12d40f
Includes fasta sequence files, microsatellite genotype files, as well as other input files -
Tajima and Nucleotide Diversity estimates
Data for Figure 2, Figure 4 Supporting Information (Tajimas' D) and Figure 7 Supporting Information (Nucleotide diversity). -
TLR1LB_All_genotypes2015
This is the output file with Phase results for TLR1LB in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad -
Sampling locations.
*Transect refers to the straight distance along which samples were collected at each site. The three sites for P. jubatus are contained within the Munchique National Park (Fig. 2). -
Data Summary
Summary of thirty game structures that compose the full combined data set [6–13]. BR 2006 [8] and DB 2005 [7] both also conducted one-shot games; we only describe and use their... -
Input files used for STRUCTURE analyses
Input files used for Bayesian analyses of genetic structure implemented in the program STRUCTURE. There is one file for each studied species (Quercus berberidifolia, Quercus... -
bgc input file for parental sympatry test population when analysing autosomal...
bgc input file for parental sympatry test population when analysing autosomal loci separately -
dedup_wf_001--45964d5c559cf3fccc57c48f7ca7ea85
This file contains shell scripts associated with the ddRAD-Seq portion of this study -
Genotype data
The TalentiEtAl_2017.ped file contains the unphased genotype data for all the 929 animals described in the paper: "Genomic analysis suggests KITLG is responsible for a roan... -
BAYPASS data and scripts
This compressed directory contains the infiles, outfiles, and scripts for the BAYPASS analyses used to delineate host-associated SNPs and to test for parallelism. A readme.txt... -
mmod DPS FST simulations
Contains various files, raw data, R script and results detailed in the accompanying ReadMe file -
Distance_matrices
Standarized distance matrices (Genetic, SST and geographic distance) used for Mantel test, Partial mantel test and MMRR
