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Selection experiment data
This file contains adult survival data and juvenile population counts during the course of the selection experiment described in the associated publication. The proportion of... -
dedup_wf_001--417836f8e8784abda81d93cfec196e64
Genotypes for European lines of A. thaliana (Chromosome 1) genotyped at a density of one SNP per kb. These data are used in our tutorial example 2 and supplementary file 2. Data... -
Alternative splice events identified in Peromyscus leucopus transcriptome
This FASTA file contains two sequences for each alternative splicing sequence, labeled as upper and lower splice, that was identified in the Peromyscus leucopus transcriptome. -
Plant trnL references and beetle derived variants
A fasta file of plant sequences amplified for this paper. Sequences are not aligned globally but beetle variants are aligned to each plant reference. The description section of... -
Bayenv output file for neutral SNPs
This is the output averaged across 10 runs of Bayenv using neutral SNPs, in 107 wolves and 6 ecotypes. The results in this file were used as a null for determining empirical... -
2497_indiv_phenotype
2497_indiv_phenotype.txt file. This file contains the phenotypes used in the analysis. Note that phenotypes are not available for all genotyped individuals. For more information... -
Bayenv2 environment file
Standardised environmental variables in file format used for the Bayenv2 analysis. -
dedup_wf_001--01488b983f5230a7efe236bfb3b5b746
Genetic data (G) and environmental data (E) infiles that were analyzed in this manuscript. These data sets were simulated in R according to the Wright-Fisher model with... -
Estimate pairwise FST script
A script to estimate the population pairwise FST. Inputs genotypes as a Matlab file and exports FST values as another Matlab file. -
Pairwise FST estimates for the X chromosome SNPs
A Matlab file containing 867049 X chromosome SNPs, their pairwise FST estimates, and P-values for each SNP derived from coalescent simulations. -
SF2 input files
Frequencies of European human SNPs and fixed differences (x=n) to chimpanzee that was used as input file for SweepFinder2. Original data from: Drmanac R, Sparks AB, Callow MJ et... -
Contig sequences for P. leucopus transcriptome (fasta file)
Transcriptome contigs assembled from raw SOLiD 5500 xl sequencing reads using Trinity. Only contigs with high-quality open reading frames identified from Transdecoder and... -
dedup_wf_001--e887bd39751fec49e0a5ff1ebe388da1
A file describing the headers and contents of the other uploaded files
