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Selection experiment data
This file contains adult survival data and juvenile population counts during the course of the selection experiment described in the associated publication. The proportion of... -
dedup_wf_001--417836f8e8784abda81d93cfec196e64
Genotypes for European lines of A. thaliana (Chromosome 1) genotyped at a density of one SNP per kb. These data are used in our tutorial example 2 and supplementary file 2. Data... -
Plant trnL references and beetle derived variants
A fasta file of plant sequences amplified for this paper. Sequences are not aligned globally but beetle variants are aligned to each plant reference. The description section of... -
Bayenv output file for neutral SNPs
This is the output averaged across 10 runs of Bayenv using neutral SNPs, in 107 wolves and 6 ecotypes. The results in this file were used as a null for determining empirical... -
2497_indiv_phenotype
2497_indiv_phenotype.txt file. This file contains the phenotypes used in the analysis. Note that phenotypes are not available for all genotyped individuals. For more information... -
Bayenv2 environment file
Standardised environmental variables in file format used for the Bayenv2 analysis. -
dedup_wf_001--01488b983f5230a7efe236bfb3b5b746
Genetic data (G) and environmental data (E) infiles that were analyzed in this manuscript. These data sets were simulated in R according to the Wright-Fisher model with... -
Estimate pairwise FST script
A script to estimate the population pairwise FST. Inputs genotypes as a Matlab file and exports FST values as another Matlab file. -
Pairwise FST estimates for the X chromosome SNPs
A Matlab file containing 867049 X chromosome SNPs, their pairwise FST estimates, and P-values for each SNP derived from coalescent simulations. -
SF2 input files
Frequencies of European human SNPs and fixed differences (x=n) to chimpanzee that was used as input file for SweepFinder2. Original data from: Drmanac R, Sparks AB, Callow MJ et...
