362 items found

Types: software Groups: figshare Tags: Genetics Microbiology

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  • software

    r37980778c78--ac9b9bea256b618273d284ce29bd73e8

    See the improved changelog-detailed.md for a detailed list of semantic changes in the EDAM ontology. Summary of changes 20 formats added (listed in changelog-detailed.md)...
  • software

    r37980778c78--aaeaa8ec3da750dd40bd639199f0ede8

    Library that contains several utilities that helps with the management of SDMXSource libraries Documentation Documentation is available on-line in the gCube Wiki:...
  • software

    wiqr R package: a SPARQL client for Wikidata Query Service

    wiqr is a small R package containing simple SPARQL client for Wikidata Query Service.   Installation You can install the latest development version...
  • software

    Software used in 'Firedrake version for: A Comparison of Second-Order Model O...

    This record collates DOIs for the software components used in 'Firedrake version for: A Comparison of Second-Order Model Order Reduction Methods for an Artificial Fishtail'....
  • software

    r37980778c78--cb5d9266b51dbe1bee697b9655ce5c44

    The Sequence Distance Graph framework works with genome assembly graphs and raw data from paired, linked and long reads. It includes a simple deBruijn graph module, and can...
  • software

    r37980778c78--a7007b3b8857f74a7474f892a71f9acf

    This record collates DOIs for the software components used in 'Code generation for generally mapped finite elements'. The Firedrake components and dependencies used were:...
  • software

    r37980778c78--652fad34bb5661efc56ec4b783d35a5d

    This is the first public release of the ITCell code, and should match that used by the web server at https://salilab.org/itcell/.
  • software

    r37980778c78--ffd2297e0228ea2a0fa4ff10723acbd1

    ========================== SciPy 0.18.1 Release Notes SciPy 0.18.1 is a bug-fix release with no new features compared to 0.18.0. Authors @kleskjr Evgeni Burovski CJ Carey...
  • software

    r37980778c78--f12f6ee5b9dfe7396e8498fc5106d62a

    This (in progress) repository includes the code, data, documentation, metadata and figure source files that accompany this research.
  • software

    r37980778c78--977dcd70866f4ec7efa16561232497a2

    This record collates DOIs for the software components used in 'Automated shape differentiation in the Unified Form Language'. The Firedrake components and dependencies used...
  • software

    r37980778c78--86aabfae1ffb8175e39f668f5f4fae55

    Bug fix release: Fix #15: Can now instantiate two PhilDB classes at once Close #14: Rename commandline tool to phildb from phil
  • software

    r37980778c78--fbca4ddf045ec6601b297f511d4b4175

    Genomic GPS applies the multilateration technique commonly used in the global positioning system (GPS) to genomic data. In the framework we present here, investigators calculate...
  • software

    Titan Aerosol Models

    Install With pip: $ pip install titan-aerosols Or directly from the source files: $ git clone https://github.com/seignovert/python-titan-aerosols.git $ cd...
  • software

    r37980778c78--f5062bf6ac5079c39371b42fa4dcaf47

    GenerateAG.m is a short MATLAB script that calculates a restricted generalized inverse AG using input data from an atmospheric photochemistry mechanism. The inverse problem...
  • software

    r37980778c78--99fb8ade83011b2e6853edcf9d5dd77d

    KNIME nodes for KripoDB (https://github.com/3D-e-Chem/kripodb). KripoDB is a Python package used to interact with Kripo fragment, fingerprint and similarity data files. KRIPO...
  • software

    r37980778c78--966956c737b9a9d2b8a6b88714ee54b3

    Data model for representing TS charts Support Bugs and support requests can be reported in the gCube issue tracking tool: https://support.d4science.org/projects/gcube/...
  • software

    DeepEM: Demonstrating a Deep Learning Approach to DEM Inversion

    DeepEM is a (supervised) deep learning approach to differential emission measure (DEM) inversion that is currently under development on GitHub. This first release coincides...
  • software

    r37980778c78--82f1f8ef084b6c3a8dc83421d3c6cb96

    Accounting Library Documentation Documentation is available on-line in the gCube Wiki: https://wiki.gcube-system.org/gcube/index.php/Accounting_Lib Installation...
  • software

    r37980778c78--3ee43fc29941210957142880a3f8ae06

    gCube Ckan metadata publisher widget is a GWT Widget that allows to publish metadata on the d4science ckan data catalogue. Support Bugs and support requests can be reported in...