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Poly-(3-hexylthiophene) Model and Code for Molecular Dynamic Simulations
Here we present files necessary for simulating our united-atom poly-(3-hexylthiophene) model in molecular dynamics. The input file "P3HT_Blends.py" acts a wrapper... -
filter_fasta.py
Usage: ./filter_fasta.py [path to input dir] [path to accepted taxon list]. Input files are expected to be in fasta format. The script will traverse all files in the input dir,... -
r37980778c78--905748fea9521b1bf8cb506b658c4d2b
This file contains all the scripts and formated data that were used for the ms entitled "The quiescent X, the replicative Y and the Autosomes" by Achaz et al. The biorxiv... -
TractSeg pretrained weights - endings_segmentation
Pretrained weights for TractSeg for output type "endings_segmentation". -
MitoS segmentation tool (GPU) for Linux
The MitoS segmentation tool (GPU) is an easy-to-use GUI-based segmentation tool that enables biologists to use the pretrained deep learning model MitoSegNet to segment... -
RFixer: a tool for repairing complex regular expressions using examples
This artifact contains the virtual machine image that has RFixer installed. RFixer is a tool for repairing complex regular expressions using examples. Given an incorrect... -
Aurora Galaxy Tools: Using R Markdown as a framework for Galaxy tool development
While many biologists are able to run sophisticated bioinformatic analysis using Galaxy, it is not always clear how well they understand the role of each tool in a workflow or... -
r37980778c78--41385935c80cd8eb2bd730a527da7e12
The MitoS segmentation tool (CPU) is an easy-to-use GUI-based segmentation tool that enables biologists to use the pretrained deep learning model MitoSegNet to segment... -
r37980778c78--4e6228de4289125c5ca85af9a62b93a8
Pretrained weights for TractSeg for output type "endings_segmentation". -
MitoS segmentation tool (GPU) for Windows
The MitoS segmentation tool (GPU) is an easy-to-use GUI-based segmentation tool that enables biologists to use the pretrained deep learning model MitoSegNet to segment... -
scripts for "The quiescent X, the replicative Y and the Autosomes"
This file contains all the scripts and formated data that were used for the ms entitled "The quiescent X, the replicative Y and the Autosomes" by Achaz et al. The...
