57 items found

Licenses: License Not Specified Tags: Biochemistry Developmental Biology Molecular Biology Groups: figshare Types: software

Filter Results
  • software

    Software used in 'Discontinuous Galerkin discretization for two-equation turb...

    This record collates DOIs for the software components used in 'Discontinuous Galerkin discretization for two-equation turbulence closure model'. The Firedrake components and...
  • software

    A Jupyter Notebook to Describe URLs from Journal documents

    A notebook with a script that harvest a Journal articles using OAI-PHM, download articles files and convert to text, cralws referenced URLs checking its HTTP reponse codes....
  • software

    r37980778c78--8d6f5f8e6b980bd90951cf8b2e8ead3a

    Tool for the determination of simultaneity factors in PEV charging processes
  • software

    r37980778c78--a7007b3b8857f74a7474f892a71f9acf

    This record collates DOIs for the software components used in 'Code generation for generally mapped finite elements'. The Firedrake components and dependencies used were:...
  • software

    Poly-(3-hexylthiophene) Model and Code for Molecular Dynamic Simulations

    Here we present files necessary for simulating our united-atom poly-(3-hexylthiophene) model in molecular dynamics. The input file "P3HT_Blends.py" acts a wrapper...
  • software

    cwi-swat/jsep-sloc-versus-cc: Scripts and Data used for the Empirical analysi...

    This archive contains a Rascal-MPL Eclipse project used to parse and calculate the metrics for the Java corpus and analyze the metrics from the Java corpus and the C corpus for...
  • software

    r37980778c78--f5062bf6ac5079c39371b42fa4dcaf47

    GenerateAG.m is a short MATLAB script that calculates a restricted generalized inverse AG using input data from an atmospheric photochemistry mechanism. The inverse problem...
  • software

    r37980778c78--99fb8ade83011b2e6853edcf9d5dd77d

    KNIME nodes for KripoDB (https://github.com/3D-e-Chem/kripodb). KripoDB is a Python package used to interact with Kripo fragment, fingerprint and similarity data files. KRIPO...
  • software

    filter_fasta.py

    Usage: ./filter_fasta.py [path to input dir] [path to accepted taxon list]. Input files are expected to be in fasta format. The script will traverse all files in the input dir,...
  • software

    SI for "A Computational Study of Structural and Excitonic Properties of Chlor...

    files in chapter * are stored in chapter_* folders note for CTubeGen software in chapter_5 folder A software I developed for generating arbitrary chlorosomal tubes,...
  • software

    r37980778c78--905748fea9521b1bf8cb506b658c4d2b

    This file contains all the scripts and formated data that were used for the ms entitled "The quiescent X, the replicative Y and the Autosomes" by Achaz et al. The biorxiv...
  • software

    r37980778c78--97d0a52e5b396c15f61aff3030b1e46e

    Includes compiled standalone apps for Apple Mac OSX (BeamformingAlgComp_Listen_v1_MAC.zip) and Windows (BeamformingAlgComp_Listen_v1_WIN.zip). Just extract the file and run the...
  • software

    TractSeg pretrained weights - endings_segmentation

    Pretrained weights for TractSeg for output type "endings_segmentation".
  • software

    r37980778c78--5a1b5d558e17bd91875c69985a2f8a60

    Bioinformatics Lab, Dept. of Biotechnology, Heritage Institute of Technology, Kolkata, India Summary Working with trajectories generated with Desmond and GROMACS molecular...
  • software

    MitoS segmentation tool (GPU) for Linux

    The MitoS segmentation tool (GPU) is an easy-to-use GUI-based segmentation tool that enables biologists to use the pretrained deep learning model MitoSegNet to segment...
  • software

    r37980778c78--a94d60b479819dfd5ce86a9ad943b532

    Marine GIS database in Hong Kong This is the graduation project under the Master Program -- Environmental Management (MSc EnvMan) in The University of Hong Kong. The Swire...
  • software

    Software used in 'PCPATCH: software for the topological construction of multi...

    This record collates DOIs for the software components used in 'PCPATCH: software for the topological construction of multigrid relaxation methods'. The Firedrake components...
  • software

    gerw/restricted_mesh_deformations v1.0

    Shape Optimization based on Restricted Mesh Deformations    
  • software

    The Deal.Ii Tutorial Step-60: Non-Matching Grid Constraints Through Distribut...

    This tutorial program shows how to solve partial differential equations involving two non-matching discretisations. In particular we show how to solve a partial...
  • software

    Mntabassm/Saen-Lars: Zenodo

    Package Repository | SAEN-LARS  Version: 1.0.0 Title: Sequential Adaptive Elastic Net Approach for Single-snapshot Source Localization Short...