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r37980778c78--ae63f250d3ae777963264fed4ffcd368
This is a beta release of the CSSD2019 course materials. -
filter_fasta.py
Usage: ./filter_fasta.py [path to input dir] [path to accepted taxon list]. Input files are expected to be in fasta format. The script will traverse all files in the input dir,... -
r37980778c78--4995558daabc00f8992f3b85e9ef74e2
The artifact for Staged Abstract Interpreters (OOPSLA 2019). -
amPy30
Python script used to pre-process raw sequencing reads. Calls on three data files: 2 raw sequencing read files in FastA format ("X.TCA.454Reads.fna"), and "barcodeIDs.txt" -
r37980778c78--eef11f29dc1baff3966f531829c95754
One of the most common form of cancer in the United States is skin cancer. There are three forms of skin cancer with melanoma being the deadliest but also the least common out... -
r37980778c78--963d18f2f29e1e5ffc34e69658b8a8ac
This script is a modified version of the script implemented by Leighton Pritchard (https://github.com/widdowquinn/scripts/blob/master/bioinformatics/run_...) for the MLST... -
Supplementary File 2
This is a Python 3.5 script of the ODE model described in Sanguanini and Cattaneo 2018. This file evaluates the resting-state output of the model for multiple values of... -
r37980778c78--b31457c739c8188f565fc8ee31e30cee
Clawpack (Conservation Laws Package) Version 5.6.1 is a software package to solve hyperbolic partial differential equations using high-resolution Godunov-type finite volume...
