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Sourcerer Asts
Overview Sourcerer is a large corpus of open source Java software. It was constructed by fully downloading the source code of 19 K projects, of which 6 K turned out to be... -
Exploring Internal Quality Metric Fluctuations in Revision Histories – An Emp...
Datasets and analysis script for the article "Exploring Internal Quality Metric Fluctuations in Revision Histories – An Empirical Study" submitted to ESEM'19... -
Fedora and Debian software package dependency networks along with description...
Fedora (version 28) and Debian (version 9.5) software package dependency networks along with description text associated with nodes. Also includes learned vectors by using... -
Uncertainty-aware MBT Module Dataset
This is the anonymized dataset containing raw data of the experiments described in the research paper: "Uncertainty-aware Exploration in Model-based Testing", submitted to the... -
Security Bug Conversations
This dataset will be released as part of the following publication. Benjamin S. Meyers, Nuthan Munaiah, Andrew Meneely, and Emily Prud'hommeaux. Pragmatic... -
cgmanalysis: An R package for descriptive analysis of continuous glucose moni...
Continuous glucose monitoring (CGM) is an essential part of diabetes care. Real-time CGM data are beneficial to patients for daily glucose management, and aggregate summary... -
Using the CustusX toolkit to create an image guided bronchoscopy application:...
Purpose The aim of this paper is to show how a specialized planning and guidance application called Fraxinus, can be built on top of the CustusX platform (www.custusx.org),... -
Open source software in quantum computing
Open source software is becoming crucial in the design and testing of quantum algorithms. Many of the tools are backed by major commercial vendors with the goal to make it... -
Open source software security vulnerability detection based on dynamic behavi...
Open source software has been widely used in various industries due to its openness and flexibility, but it also brings potential security problems. Therefore, security analysis... -
Image-Based Single Cell Profiling: High-Throughput Processing of Mother Machi...
Background Microfluidic lab-on-chip technology combined with live-cell imaging has enabled the observation of single cells in their spatio-temporal context. The mother machine... -
Diving-flight aerodynamics of a peregrine falcon (Falco peregrinus)
This study investigates the aerodynamics of the falcon Falco peregrinus while diving. During a dive peregrines can reach velocities of more than 320 km h−1. Unfortunately, in... -
A sequential Monte Carlo approach to gene expression deconvolution
: High-throughput gene expression data are often obtained from pure or complex (heterogeneous) biological samples. In the latter case, data obtained are a mixture of different... -
Singularity: Scientific containers for mobility of compute
Here we present Singularity, software developed to bring containers and reproducibility to scientific computing. Using Singularity containers, developers can work in... -
Reproduction study using public data of: Development and validation of a deep...
Replication studies are essential for validation of new methods, and are crucial to maintain the high standards of scientific publications, and to use the results in practice.... -
Ten quick tips for using a Raspberry Pi
Much of biology (and, indeed, all of science) is becoming increasingly computational. We tend to think of this in regards to algorithmic approaches and software tools, as well... -
A Smartphone Ecological Momentary Assessment/Intervention "App" for Collectin...
We have designed a flexible ecological momentary assessment/intervention smartphone (EMA/EMI) "app". We examine the utility of this app for collecting real-time data, and... -
Visualizing the Topical Structure of the Medical Sciences: A Self-Organizing ...
Background We implement a high-resolution visualization of the medical knowledge domain using the self-organizing map (SOM) method, based on a corpus of over two million... -
dedup_wf_001--c798a3121ce1a79b382d21249795b8f2
Cloud computing has revolutionized the development and operations of hardware and software across diverse technological arenas, yet academic biomedical research has lagged... -
Ranking of Business Process Simulation Software Tools with DEX/QQ Hierarchica...
The omnipresent need for optimisation requires constant improvements of companies’ business processes (BPs). Minimising the risk of inappropriate BP being implemented is usually... -
A quick guide to software licensing for the scientist-programmer.
Computing is ubiquitous in every domain of scientific research. Software is the means by which scientists harness the power of computers, and much scientific computing relies on...
