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D. melanogaster median Fst and latitude
D. melanogaster Fst values for pair-wise population comparisons and the latitude of each population. The analysis of isolation by distance used the median Fst (median.Fst) and... -
Plink .bim file used for Exploratory Behaviour analysis
Contains marker information for 459,502 autosomal SNPs -
Demographic estimation data - s9649
A Matlab file containing data related to demographic parameter estimation by means of Approximate Bayesian Computation. -
Plink .bed file used for Exploratory Behaviour analysis
Contains data on 415 birds typed at 459,502 autosomal SNPs -
Bayenv2 matlab export script - chromosome X
A script to export the output of Bayenv2 into a Matlab file (X chromosome). -
Pairwise FST estimates for autosomal SNPs
A Matlab file containing 3663890 autosomal SNPs, their pairwise FST estimates, and P-values for each SNP derived from coalescent simulations. -
Plant trnL references and beetle derived variants
A fasta file of plant sequences amplified for this paper. Sequences are not aligned globally but beetle variants are aligned to each plant reference. The description section of... -
Demographic estimation data - simulated BFs autosomes
A Matlab file containing Bayes factors calculated on simulated data from the demographic estimation analysis by means of Approximate Bayesian Computation. Contains autosomal SNPs. -
Demographic estimation data - simulated FST autosomes
A Matlab file containing FST estimated on simulated data from the demographic estimation analysis by means of Approximate Bayesian Computation. Contains autosomal SNPs. -
perl script to run quantiNEMO simulations
This is a wrapper script that I wrote to run quantiNEMO to generate the simulated data files that were analyzed in the paper. -
ABC rejection data - X chromosome
A Matlab file containing the Approximate Bayesian Computation rejection matrix (X chromosome). -
Bayenv2 intermediate file - raw BFs
An intermediate Matlab file containing raw Bayes factors from Bayenv2. -
dedup_wf_001--0101870255c7e1d6ac878088505eea75
All the data files and metadata files required to replicate the results of this paper. Scripts and readme are available on github https://github.com/ACharbonneau/creepy-barnacle -
Bayenv2 environment file
Standardised environmental variables in file format used for the Bayenv2 analysis. -
Simulated Data
################################################## Introduction ################################################## The data was simulated with ms (Hudson, Bioinformatics,... -
Power analysis - simulations with sel. coeff. of 0.05
A Matlab file containing data related to the power analysis. Simulations of the evolution of a polygenic trait with the multilocus selection coefficient set at 0.1 (de Vladar...
