43 items found

Organisations: RISIS2OpenData Groups: Datacite Tags: 69999 Biological Sciences not elsewhere classified 80699 Information Systems not elsewhere classified Adaptation Natural Selection and Contemporary Evolution

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  • dataset

    Selection experiment data

    This file contains adult survival data and juvenile population counts during the course of the selection experiment described in the associated publication. The proportion of...
  • dataset

    Information for BAM files on NCBI SRA

    BAM files for 117 wolves, separated into genic and neutral regions. See paper text for details on alignment and mapping pipeline.
  • dataset

    dedup_wf_001--417836f8e8784abda81d93cfec196e64

    Genotypes for European lines of A. thaliana (Chromosome 1) genotyped at a density of one SNP per kb. These data are used in our tutorial example 2 and supplementary file 2. Data...
  • dataset

    selection data

    Data file containing measurements of selection gradients and differentials
  • dataset

    RefSNP_annotation_Dryad_KellerOlson

    RefSNP_annotation_Dryad_KellerOlson
  • dataset

    input_Bvalues

    B-value map that was used as input file for SweepFinder2. Original data from: McVicker G, Gordon D, Davis C, Green P (2009) Widespread genomic signatures of natural selection in...
  • dataset

    SPAD data

    This file describes the SPAD data and contains the SAS code for analyses
  • dataset

    WythamCNV

    A list of CNVs in the unfiltered Wytham Woods dataset
  • dataset

    dedup_wf_001--8a37bdf31208bf12c5954cd7b260e491

    See Readme file
  • dataset

    110506_SN365_A_s_8_2_seq_GKW-36.txt.gz.004

    110506_SN365_A_s_8_2_seq_GKW-36.txt.gz.004
  • dataset

    Demographic estimation data - s9649

    A Matlab file containing data related to demographic parameter estimation by means of Approximate Bayesian Computation.
  • dataset

    110506_SN365_A_s_8_1_seq_GKW-36.txt.gz.001

    110506_SN365_A_s_8_1_seq_GKW-36.txt.gz.001
  • dataset

    Pairwise FST estimates for autosomal SNPs

    A Matlab file containing 3663890 autosomal SNPs, their pairwise FST estimates, and P-values for each SNP derived from coalescent simulations.
  • dataset

    Demographic estimation data - simulated BFs autosomes

    A Matlab file containing Bayes factors calculated on simulated data from the demographic estimation analysis by means of Approximate Bayesian Computation. Contains autosomal SNPs.
  • dataset

    Demographic estimation data - simulated FST autosomes

    A Matlab file containing FST estimated on simulated data from the demographic estimation analysis by means of Approximate Bayesian Computation. Contains autosomal SNPs.
  • dataset

    perl script to run quantiNEMO simulations

    This is a wrapper script that I wrote to run quantiNEMO to generate the simulated data files that were analyzed in the paper.
  • dataset

    ABC rejection data - X chromosome

    A Matlab file containing the Approximate Bayesian Computation rejection matrix (X chromosome).
  • dataset

    Data file for multiple group PCA current climate

    Data file for multiple group PCA current climate
  • dataset

    110506_SN365_A_s_8_2_seq_GKW-36.txt.gz.003

    110506_SN365_A_s_8_2_seq_GKW-36.txt.gz.003
  • dataset

    2497_indiv_phenotype

    2497_indiv_phenotype.txt file. This file contains the phenotypes used in the analysis. Note that phenotypes are not available for all genotyped individuals. For more information...