-
Information on SNPs identified from transcriptome data (vcf file)
SNPs identified from transcriptome alignment files in variant call format. SNPs were identified using GATK. Parameters and filters for calling SNPs are listed in header.... -
Alternative splice events identified in Peromyscus leucopus transcriptome
This FASTA file contains two sequences for each alternative splicing sequence, labeled as upper and lower splice, that was identified in the Peromyscus leucopus transcriptome. -
Demographic estimation data - s9649
A Matlab file containing data related to demographic parameter estimation by means of Approximate Bayesian Computation. -
Pairwise FST estimates for autosomal SNPs
A Matlab file containing 3663890 autosomal SNPs, their pairwise FST estimates, and P-values for each SNP derived from coalescent simulations. -
Demographic estimation data - simulated BFs autosomes
A Matlab file containing Bayes factors calculated on simulated data from the demographic estimation analysis by means of Approximate Bayesian Computation. Contains autosomal SNPs. -
Demographic estimation data - simulated FST autosomes
A Matlab file containing FST estimated on simulated data from the demographic estimation analysis by means of Approximate Bayesian Computation. Contains autosomal SNPs. -
perl script to run quantiNEMO simulations
This is a wrapper script that I wrote to run quantiNEMO to generate the simulated data files that were analyzed in the paper. -
Simulated Data
################################################## Introduction ################################################## The data was simulated with ms (Hudson, Bioinformatics,... -
Power analysis - simulations with sel. coeff. of 0.05
A Matlab file containing data related to the power analysis. Simulations of the evolution of a polygenic trait with the multilocus selection coefficient set at 0.1 (de Vladar... -
dedup_wf_001--01488b983f5230a7efe236bfb3b5b746
Genetic data (G) and environmental data (E) infiles that were analyzed in this manuscript. These data sets were simulated in R according to the Wright-Fisher model with... -
Demographic estimation data - simulated BFs chromosome X
A Matlab file containing Bayes factors calculated on simulated data from the demographic estimation analysis by means of Approximate Bayesian Computation. Contains X chromosome... -
Estimate pairwise FST script
A script to estimate the population pairwise FST. Inputs genotypes as a Matlab file and exports FST values as another Matlab file. -
Demographic estimation data - s8148
A Matlab file containing data related to demographic parameter estimation by means of Approximate Bayesian Computation. -
Microsatellite_data
Explanations for datafile "Microsatellite data.xls" This datafile contains microsatellite genotype information of Mastomys natalensis. General comment: "-9" describes a... -
Pairwise FST estimates for the X chromosome SNPs
A Matlab file containing 867049 X chromosome SNPs, their pairwise FST estimates, and P-values for each SNP derived from coalescent simulations.
