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TLR1LB_All_genotypes2015
This is the output file with Phase results for TLR1LB in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad -
TLR3_All_genotypes2015
This is the output file with Phase results for TLR3 in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad -
perl script to run quantiNEMO simulations
This is a wrapper script that I wrote to run quantiNEMO to generate the simulated data files that were analyzed in the paper. -
ABC rejection data - X chromosome
A Matlab file containing the Approximate Bayesian Computation rejection matrix (X chromosome). -
Bayenv2 intermediate file - raw BFs
An intermediate Matlab file containing raw Bayes factors from Bayenv2. -
dedup_wf_001--0101870255c7e1d6ac878088505eea75
All the data files and metadata files required to replicate the results of this paper. Scripts and readme are available on github https://github.com/ACharbonneau/creepy-barnacle -
TLR4_All_genotypes2015
This is the output file with Phase results for TLR4 in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad -
TLR1LA_All_genotypes2015
This is the output file with Phase results for TLR1LA in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad -
dedup_wf_001--01488b983f5230a7efe236bfb3b5b746
Genetic data (G) and environmental data (E) infiles that were analyzed in this manuscript. These data sets were simulated in R according to the Wright-Fisher model with... -
Estimate pairwise FST script
A script to estimate the population pairwise FST. Inputs genotypes as a Matlab file and exports FST values as another Matlab file. -
Pairwise FST estimates for the X chromosome SNPs
A Matlab file containing 867049 X chromosome SNPs, their pairwise FST estimates, and P-values for each SNP derived from coalescent simulations. -
TLR21_All_genotypes2015
This is the output file with Phase results for TLR21 in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad -
dedup_wf_001--e887bd39751fec49e0a5ff1ebe388da1
A file describing the headers and contents of the other uploaded files
