23 items found

Licenses: License Not Specified Tags: 69999 Biological Sciences not elsewhere classified 80699 Information Systems not elsewhere classified Adaptation Ecological Genetics Natural Selection and Contemporary Evolution Groups: Datacite Organisations: RISIS2OpenData

Filter Results
  • dataset

    dedup_wf_001--417836f8e8784abda81d93cfec196e64

    Genotypes for European lines of A. thaliana (Chromosome 1) genotyped at a density of one SNP per kb. These data are used in our tutorial example 2 and supplementary file 2. Data...
  • dataset

    RefSNP_annotation_Dryad_KellerOlson

    RefSNP_annotation_Dryad_KellerOlson
  • dataset

    WythamCNV

    A list of CNVs in the unfiltered Wytham Woods dataset
  • dataset

    dedup_wf_001--8a37bdf31208bf12c5954cd7b260e491

    See Readme file
  • dataset

    110506_SN365_A_s_8_2_seq_GKW-36.txt.gz.004

    110506_SN365_A_s_8_2_seq_GKW-36.txt.gz.004
  • dataset

    110506_SN365_A_s_8_1_seq_GKW-36.txt.gz.001

    110506_SN365_A_s_8_1_seq_GKW-36.txt.gz.001
  • dataset

    perl script to run quantiNEMO simulations

    This is a wrapper script that I wrote to run quantiNEMO to generate the simulated data files that were analyzed in the paper.
  • dataset

    110506_SN365_A_s_8_2_seq_GKW-36.txt.gz.003

    110506_SN365_A_s_8_2_seq_GKW-36.txt.gz.003
  • dataset

    2497_indiv_phenotype

    2497_indiv_phenotype.txt file. This file contains the phenotypes used in the analysis. Note that phenotypes are not available for all genotyped individuals. For more information...
  • dataset

    dedup_wf_001--0101870255c7e1d6ac878088505eea75

    All the data files and metadata files required to replicate the results of this paper. Scripts and readme are available on github https://github.com/ACharbonneau/creepy-barnacle
  • dataset

    110506_SN365_A_s_8_1_seq_GKW-36.txt.gz.003

    110506_SN365_A_s_8_1_seq_GKW-36.txt.gz.003
  • dataset

    2497_indiv_5591_markers

    The .ped file is a file of genotypes in plink style (see http://pngu.mgh.harvard.edu/~purcell/plink/). The column headings are: Family ID, Individual ID, Paternal ID, Maternal...
  • dataset

    SNPData

    File containing the SNPs for all the studied populations
  • dataset

    Simulated Data

    ################################################## Introduction ################################################## The data was simulated with ms (Hudson, Bioinformatics,...
  • dataset

    batch_1.sumstats

    Summary stats output from Stacks
  • dataset

    dedup_wf_001--74790d1a24262f7029eebef7b595acc0

    110506_SN365_A_s_8_1_seq_GKW-36.txt.gz.002
  • dataset

    dedup_wf_001--01488b983f5230a7efe236bfb3b5b746

    Genetic data (G) and environmental data (E) infiles that were analyzed in this manuscript. These data sets were simulated in R according to the Wright-Fisher model with...
  • dataset

    dedup_wf_001--adc517388abcffd4ade04c76237882c2

    VCF output from Stacks.
  • dataset

    WythamCNV_clean

    A list of CNVs in the filtered Wytham Woods dataset
  • dataset

    MetaPCA

    Data file containing standard deviations of population means and latitudes from published common garden studies