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pTuneos: prioritizing tumor neoantigens from next-generation sequencing data
Abstract Background Cancer neoantigens are expressed only in cancer cells and presented on the tumor cell surface in complex with major histocompatibility complex (MHC) class I... -
dedup_wf_001--048475c87ab3680e59cd6c72c11dc762
Microsoft excel file containing raw data for Fig3B AICAR. -
Selection experiment data
This file contains adult survival data and juvenile population counts during the course of the selection experiment described in the associated publication. The proportion of... -
Data for figures 1, 2, 3a, 3b and 4
This excel file contains the data used in the analysis and production of figures 1, 2, 3a, 3b and 4 of the manuscript. -
Additional file 1 of Accelerated parallel algorithm for gene network reverse ...
Source code. The source code developed are available in the Bitbucket repository: https://github.com/califano-lab/GPU-ARACNE . (ZIP 25 kb) -
Experiment2
Fasta files of amplicon reads from Experiment 2 for both the MiSeq and Ion Torrent. All fasta files are non-dereplicated and have been separated into sample batches based on MID... -
Main SNP file STRUCTURE format
Dataset of 3764 SNP structure file. Population information included in second column. -
dedup_wf_001--0d70ba401028555fe4c68840718be5fd
Standard input file for BLAST2GO. This file can be loaded directly into .jnlp executable file downloaded from BLAST2GO website. Includes BLASTX results against NCBI’s... -
Bliss_bryo_embl113.tag
The unique P6 loop trnL sequences produced by amplification of DNA with the primers bryo_P6F_1* & bryo_P6R as detailed in the associated publication. The data was recovered... -
dedup_wf_001--7c3b9e66ede807477ef24d7021a7ded3
WMD and PC values for the thalamus for the entire sample -
dedup_wf_001--fef98be22e24d509a33eb649bc3f8f20
This R script contains the code that generates simulations, distills output, and draws figures. All other files in this archive (except for WNSBats_PowerLaw.R) are output of... -
Additional file 19: Figure S18. of Defining the transcriptomic landscape of t...
Top significant GO terms from the Cellular component category in non-neurons. To identify and visualize some of the top significant GO terms, a bar graph was plotted with the... -
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Cooper, Jerry, https://orcid.org/0000-0003-4994-3897. Claims were made on Bloodhound, https://bloodhound-tracker.net... -
Molecular data used in analyses of prokaryotic community composition
See README file included in the zip archive. -
dedup_wf_001--47c2e7dee84c36d299c92f986ed61353
Excel file with all data required to calculate M value from Defronzo formula plus animal assignment to three different groups defined by their diet -
An integrated framework for the identification of potential miRNA-disease ass...
MicroRNAs (miRNAs) play an important role in prevention, diagnosis and treatment of human complex diseases. Predicting potential miRNA-disease associations could provide... -
MOESM7 of RaGOO: fast and accurate reference-guided scaffolding of draft genomes
Additional file 7: â.assemblyâ file for JuiceBox Assembly Tools M82 analysis.
