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Licenses: License Not Specified Tags: Biochemistry Developmental Biology Molecular Biology Science Policy Groups: Datacite figshare Types: software

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  • software

    Software used in 'Discontinuous Galerkin discretization for two-equation turb...

    This record collates DOIs for the software components used in 'Discontinuous Galerkin discretization for two-equation turbulence closure model'. The Firedrake components and...
  • software

    A Jupyter Notebook to Describe URLs from Journal documents

    A notebook with a script that harvest a Journal articles using OAI-PHM, download articles files and convert to text, cralws referenced URLs checking its HTTP reponse codes....
  • software

    Poly-(3-hexylthiophene) Model and Code for Molecular Dynamic Simulations

    Here we present files necessary for simulating our united-atom poly-(3-hexylthiophene) model in molecular dynamics. The input file "P3HT_Blends.py" acts a wrapper...
  • software

    cwi-swat/jsep-sloc-versus-cc: Scripts and Data used for the Empirical analysi...

    This archive contains a Rascal-MPL Eclipse project used to parse and calculate the metrics for the Java corpus and analyze the metrics from the Java corpus and the C corpus for...
  • software

    SI for "A Computational Study of Structural and Excitonic Properties of Chlor...

    files in chapter * are stored in chapter_* folders note for CTubeGen software in chapter_5 folder A software I developed for generating arbitrary chlorosomal tubes,...
  • software

    TractSeg pretrained weights - endings_segmentation

    Pretrained weights for TractSeg for output type "endings_segmentation".
  • software

    MitoS segmentation tool (GPU) for Linux

    The MitoS segmentation tool (GPU) is an easy-to-use GUI-based segmentation tool that enables biologists to use the pretrained deep learning model MitoSegNet to segment...
  • software

    Software used in 'PCPATCH: software for the topological construction of multi...

    This record collates DOIs for the software components used in 'PCPATCH: software for the topological construction of multigrid relaxation methods'. The Firedrake components...
  • software

    gerw/restricted_mesh_deformations v1.0

    Shape Optimization based on Restricted Mesh Deformations    
  • software

    The Deal.Ii Tutorial Step-60: Non-Matching Grid Constraints Through Distribut...

    This tutorial program shows how to solve partial differential equations involving two non-matching discretisations. In particular we show how to solve a partial...
  • software

    Mntabassm/Saen-Lars: Zenodo

    Package Repository | SAEN-LARS  Version: 1.0.0 Title: Sequential Adaptive Elastic Net Approach for Single-snapshot Source Localization Short...
  • software

    Dealii: Deal.Ii Version 8.4.2

    The major changes of this release are: Parallel triangulations can now be partitioned in ways that allow weighting cells differently. Improved support for complex numbers...
  • software

    Code and data for "Changes in carbon oxidation state of metagenomes along geo...

    This deposition contains the code and data files that are used to make the figures in the paper titled "Changes in carbon oxidation state of metagenomes along geochemical...
  • software

    jamesrhester/PyFormatTransformer 0.9

    This software is described in Hester, J.R. (2016) ""A Robust, Format-Agnostic Scientific Data Transfer Framework"  The Data Science Journal 15:12,...
  • software

    RFixer: a tool for repairing complex regular expressions using examples

    This artifact contains the virtual machine image that has RFixer installed. RFixer is a tool for repairing complex regular expressions using examples. Given an incorrect...
  • software

    Aurora Galaxy Tools: Using R Markdown as a framework for Galaxy tool development

    While many biologists are able to run sophisticated bioinformatic analysis using Galaxy, it is not always clear how well they understand the role of each tool in a workflow or...
  • software

    Software used in 'Andreas Bock PhD thesis'

    This record collates DOIs for the software components used in 'Andreas Bock PhD thesis'. The Firedrake components and dependencies used were: COFFEE (A Compiler for Fast...
  • software

    Software used in 'Shape optimisation examples for 'Shape Optimisation and Rob...

    This record collates DOIs for the software components used in 'Shape optimisation examples for 'Shape Optimisation and Robust Solvers for Incompressible Flow''. The Firedrake...
  • software

    Carculator: prospective environmental and economic life cycle assessment of v...

    ``carculator`` allows to: 1. produce life cycle assessment results that include conventional midpoint impact assessment indicators as well cost indicators 2. calculate hot...
  • software

    Edamontology/Edamontology: Edam 1.20

    See the improved changelog-detailed.md for a detailed list of semantic changes in the EDAM ontology. Summary of changes 20 formats added (listed in...