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Output of genus assignment analysis
This directory contains the FASTA file output of the genus assignment analysis for each orthogroup that was identified using OrthoMCL (1,502 orthogroups in total). -
dedup_wf_001--d6d0a7e76a91fead4859f2276446732b
Raw output data from Stacks catalogue - includes alleles, SNPs and RAD tags called from Stacks reference mapping pipeline. -
dedup_wf_001--07acbe7610e3023ca4d668903692f0c0
Table S4. The expression levels of genes related to other phytohormone biosynthesis and metabolism in banana during Foc TR4 infection. (XLS 20 kb) -
Additional file 4: of Genetic and environmental factors affecting the express...
Spelt accessions used to study the Îą-gliadin canonical epitope expression with TaqMan probes. The file details the breeding status, the geographical provenance, the code, the... -
MOESM2 of Impact of merging commercial breeding lines on the genetic diversit...
Additional file 2: Table S1. Outlier SNPs identified (q-value ≤ 0.05) by BayeScan in the pairwise comparison between the current TN and the six former lines. SNP ID, SNP... -
Available data
Assembled EST-SSR sequences, single-copy gene sequences and 3,126 gene sequences with Ka value, Ks value and Ka/Ks ratio. The files (alignment file,tree file,script file) for... -
Bootstrap Trees for each gene for STAR
Zip file of 370 rooted bootstrap gene trees. Each file contains 100 bootstrap replicates of each gene. Gene ID's in file names correspond to those listed Gene regions file which... -
Additional file 1: of Phytophthora methylomes are modulated by 6mA methyltran...
Table S1. HMMER searching result of 5mC methyltransferase in 15 oomycetes. (XLSX 9 kb) -
survival_data
We measured larval mortality for S. droebachiensis at 3 different temperatures (3, 10 and 21 °C) reared in 4-l culture jars (n = 3). Temperatures in the jars were maintained... -
Supplemental Data 1
Phylogenetic dataset (TNT) used in the study. The TNT file can be converted to .nex from the ‘export (nexus format)’ function in TNT, or alternatively can be opened by ‘open... -
Gene Predictions In Gff Format For Tuatara Genome Assembly Qepc00000000.1
Maker gene predictions for Sphenodon punctatus (tuatara) isolate:... -
Pedigree file
3-generational pedigree file, containing G2 and G1's ancestors. Note that names starting by "f" or "m", at the beginning of the file, refer to G0 individuals that were inferred... -
ModelSel_PSFL_2012_DynamicAll
AIC model selection table and associated coefficients for Pacific-slope flycatcher 2012 for all models combined. Column names for the model coefficients use the following... -
Additional file 1: of Repertoire-wide gene structure analyses: a case study c...
Table ST1. Data sources and used files: list of publications, download sources, and used files of all seven species; Table ST2. Auto vs. manual: counts of gene models that were... -
ModelSel_ORJU_2013_Occupancy
AIC model selection table and associated coefficients for dark-eyed (Oregon) junco 2013 for all initial occupancy models. Column names for the model coefficients use the... -
processed_data.tar.gz
This file contains all the analysis files except raw Illumina data (available as a separate file) and raw Oxford Nanopore read in FAST5 format. As FAST5 files require Oxford... -
Opsin expression data for Narrow to Broad experiment
Expression values for all opsins normalized to cone type (single/double cone) and housekeeping gene (GNAT2). -
Additional file 3: of A combined epigenome- and transcriptome-wide associatio...
Median TPM values from RNA-Sequencing. Transcripts were ranked according to their median TPM value in the EWAS samples, with the highest expressed genes on top. (XLSX 1299 kb) -
MOESM2 of A comprehensive epigenome map of Plasmodium falciparum reveals uniq...
Additional file 2: Table S5. List of genes and their co-ordinates for each cluster is provided in a separate excel file. -
dedup_wf_001--ee23b4299166eba4736ae41cdb79d744
Phenotypes of A. thaliana grown MS medium supplemented with high sucrose at different developmental phases. (a) Phenotypes of 2-week-old plants under high sucrose conditions....
