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MEC-15-690-Dryad
This zip file extracts data used in Roy et al MEC-15-0690. The ".txt" file is the raw microsatellite scores in number of repeats formatted for the Convert.exe program. The... -
dedup_wf_001--0d70ba401028555fe4c68840718be5fd
Standard input file for BLAST2GO. This file can be loaded directly into .jnlp executable file downloaded from BLAST2GO website. Includes BLASTX results against NCBI’s... -
CoNe_IBD500_OutputFiles
CoNe Ne estimation output files for IBD scenarios with true Ne = 500. See the same readme for other input/output files for naming conventions. -
dedup_wf_001--c2b390cb87fd9c9a7588499bf5e15814
Restart files and input files for the v1306 scenario from level 13 to level 15 -
De Jong and Fowler data archive
The first worksheet in this Excel file has the data we analyzed for this paper. The second worksheet in this Excel file has metadata (variable codes, etc.) for this data set. -
Matlab code for two patch model run first
This generates the matrices and information that is later used in the patches-analysis.m file. So run this file first. -
Read_Me
This read-me file contains detailed descriptions of all data and script files accompanying this manuscript. -
Bootstrap Trees for each gene for STAR
Zip file of 370 rooted bootstrap gene trees. Each file contains 100 bootstrap replicates of each gene. Gene ID's in file names correspond to those listed Gene regions file which... -
Supplemental Data 1
Phylogenetic dataset (TNT) used in the study. The TNT file can be converted to .nex from the ‘export (nexus format)’ function in TNT, or alternatively can be opened by ‘open... -
dedup_wf_001--38c17a7155a866adbdc58f4407284972
This file contains a description of the complete datapackage, individual ReadMe files are available for each data file. -
MOESM3 of Genome-wide methylation data mirror ancestry information
Additional file 3. The reference list of informative CpGs. -
Additional file 1: of The active microbial community more accurately reflects...
Supporting Information. This file contains all the supporting information that is related to the manuscript, including additional results, figure captions and tables. This file... -
dedup_wf_001--66817b660c5aafb9d7466e488a12d40f
Includes fasta sequence files, microsatellite genotype files, as well as other input files -
Annotation File for the Annotated Reference Transcriptome of the Eastern Oyster
The Excel file provides the annotation information, including original source transcriptome, for each contig in the reference transcriptome. The ReadMe files describes the... -
Model source files
This file contains the source files of the model used in the article. This model is an object-oriented model that has been implemented in Borland Delphi.