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addax_Stacks_files
Stacks 1.01 catalog output files with summary statistics. This file must be unzipped. -
Models and Motion Files Used to Generate Simulations
Please read the ReadMe file for detailed description of each file in the archive -
WRF initial condition files
This dataset contains initial conditions files, namelist file and a piece of source code for running the WRF idealised baroclinic wave simulation. With these files you can... -
merge_sort_enzymes_files
This perl script merges files listed in column 1 of an input csv file based on various columns within the files to be merged. For example, if chromosome number is found in... -
MACCR_citations
This BibTeX file contains citations for the source clinical case reports from which metadata were extracted in the assembly of the MACCR set. No abstract text is included. -
figures_data_SFS_Rscripts
Files to make figures of SFS and scripts to compute the SFS too. The SFS are done from files in "1000G_Nb_derAll.zip". For further details, see README file -
dedup_wf_001--545d59269640eb9446b13af9622950a7
The compressed file contains BAM files of the sequencing reads mapped to the ZIKV reference genome NC_012532 and the reference genome in FASTA format. The file names of the BAM... -
dedup_wf_001--c41e8159b98ad8da8d36f478c59f959d
This zip file contains a set of data files This study is comprised of an ensemble of 10 simulations for each of the 4 focal grid cells listed in Table 4 of the manuscript. The... -
2.2_2.3_getting_Corset_Grouper_cluster_information.tar.gz
Files used to generate Corset and Grouper clusters -
Population assignments
File with population assignments for the samples: a two column text file with the sample ids in the first column and the ids of the populations in the second column. -
analysis_script
This file contains the annotated analysis script. Once the appropriate working directory is set and libraries loaded, this script will reproduce the results reported in the paper. -
DRYAD_survival_data
This is the data file associated with the survival experiment. Please check the second sheet in the file for further details regarding the individual columns. -
Additional file 1 of Development and demonstration of a state model for the e...
Scripts for the statistical software R. The zip-file contains the analysis for the simulation. For detailed instructions unzip the file and refer to the readme.txt file. (ZIP... -
chalciolepis_ABCsampler_input_file
This is an example of an input file used by the ABCsampler program. It defines the values that need to be updated at every new iteration (in capital letters - taken from the... -
Code and data for Strauss & Holekamp (2019) Inferring longitudinal hierarchie...
Files are numbered according to the order of their appearance in the analysis. File paths in the scripts will need to be changed in order for the code to run properly. Please... -
pre_post_cop_code.tar
This compressed directory contains the 45 files needed to compile the code underlying the paper and run all simulations. Parameter values for simulations are set in the PolyIn.c...
